Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1545 ATGGATTCCGACTTCCCGAACAAGGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACCCCGTTCTGCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAAGACGTTGCCGTTGACGCCGCCACCGGTTCCGGAAAAACCCTAGCCTTTGTCGTCCCTCTCGTTGAGATTCTGCGCCGGTCATGCTCTCACCCCAAGCCTCACCAGGTGCTAGGGATTATTATATCTCCTACAAGGGAGCTTTCAACCCAAATATATAATGTGGCACAACCATTCATTTCGACATTGGAGAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAAGAAAATAGAGGAGAAAGGAGCAAACATATTGATCGGCACGCCTGGGCGGTTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACTTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCCTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCAGGACTGAGAAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCTCGTGTCTTCAAAACTGCCAGAATCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGATTATTGGGGAACTGTCCTTCCTTGTCTTTCTGTTTTGAAAGGTTCCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTTCAAGGGAGAAAGCACTAGCTACATTTACATCCCTGTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCGCGAGGACTAGACATACCAGGCGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATCCCTCTCCATGAGAGAATATGTTCTGATGGTGCATTGGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGTGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACATCACTCACTTTCCACTGACGGATTTGAACCAGTTGAAGATATCAATTTCGAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGAAAGAAGAACCTACAAGCAAAGAAAGAAGCCAAAGAGAAAGAACCAAAACCTCAAAAACCAAAGAAAACCCCAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAGTTACTTTGA 1764 0.4314 MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKPHQVLGIIISPTRELSTQIYNVAQPFISTLENVKSMLLVGGAEVKADIKKIEEKGANILIGTPGRLYDIMNRMDVLDFKNFEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDLVSSKLPESSKTPSGLHIEYLECEEDKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGTVLPCLSVLKGSSLIPLHGKMKQSSREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLHERICSDGALDVVPQIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTDGFEPVEDINFEDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1545 587 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Vra2g1545 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Vra2g1545 587 Gene3D - 253 488 IPR027417 -
Vra2g1545 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Vra2g1545 587 SMART DUF4217_3 413 476 IPR025313 -
Vra2g1545 587 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Vra2g1545 587 CDD SF2_C_DEAD 254 384 - -
Vra2g1545 587 SMART ultradead3 34 234 IPR014001 -
Vra2g1545 587 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Vra2g1545 587 Coils Coil 537 564 - -
Vra2g1545 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Vra2g1545 587 SMART helicmild6 293 375 IPR001650 -
Vra2g1545 587 Gene3D - 3 227 IPR027417 -
Vra2g1545 587 CDD DEADc_DDX55 26 224 - -
Vra2g1545 587 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 585 - -
Vra2g1545 587 MobiDBLite consensus disorder prediction 501 555 - -
Vra2g1545 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Vra2g1545 587 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Vra2g1545 587 PANTHER RNA HELICASE 25 585 - -
Vra2g1545 587 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1545 Vra-Chr2 23359188 23364346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1545 22 414 Eukaryotic Initiation Factors Gene Family AT3G13920 29.442 2.57e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1545 K14809 - gmx:100801482 1049.65