Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1540 ATGTCTTCACGTGATCCTTCTTGTGCTCTCTCTCTCTCTCTCTCTCTCCTCACTACAAAAACCATCCTTCAACTGTTCTTGTCTATCTCCACATCACTTCCAACACACACTCCCTCTTTCTGTTTCACTGATTCAAAAACATCTCTTTTAGTTATGGTAGCGGAGAAAACCAACGTTACCTCTTGTCAGTTTTCTCAACATGAAGTAGGAAATACAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCATCCAAGGCGCACACCAGCCCGTGTTGTTTTTTCTTTCTCTTCTGGGTCTGGACTCTTGTTCTCTCCACCTGTTTGAAATCGGTTTTGTGCGAAGATGAGGGTTGGGATGGCGTGGTTGTGACGGCATCAAACTTCTTAGCACTCCAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGACTGAGAGGGCGTATCACTGATAAAATTGGGCAGCTTCAAGGTCTTAGAAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTTACAGGTTCCATCCCTTCTTCTTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCCAATTCCTCCAAACTTTATTCGCTTAACTTGAGTTTTAACTCTTTCTCTGGTCCTTTACCAGCTAGCTTAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAATAATCTATCTGGTCCCCTTCCTAACTCTTGGGGTCGGAGTTCTAAGAATGACGAGTTCTTTAGGCTTCGAAATTTGCTCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGCCTTAAGAGAACTCAATGAAATCTCCCTTAGTAATAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGATCTCTTTCTAGACTCAAGACACTAGACATTTCTAATAATTCCTTGAATGGGAGTTTGCCTGCTACTCTCTCTAATTTATCCTCGCTTACACTGCTGAATGTTGAGAACAACCTCCTAGAAAATCAAATCCCTGGAACTTTAGGGACTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTAGTGGGCATATTCCTTCTAGTATTGCAAACATTTCCACTCTTAAGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAACGTAGTCTTGATCTCTTCAATGTTTCTTATAATAGCCTCTCAGGTTCTGTTCCCCCTCAACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCGTGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCACCACCTCATGAAATGTCAAAACACCACCAGCATAGGAAGCTGAGTACCAAAGACATTATTCTCATAGTAGCAGGAGTTCTTCTCATGGTCCTGATCATACTTTGTTGCATCCTTCTGTTCTGTCTGATCAGAAAGAGATCAACATCAAAGGCCGAGAATGGCAGAGGTGTAGGGAGAACTGGAGCTACGAGGGCAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTGCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCGCTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTGGGAAAAATTAGACACCCTAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCCAAAGGAAGTGTTGCTTCTTTCCTACACGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTCCATTCCCAGGAGAATATTATACATGGAAACCTCACATCCAGTAATGTATTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCCGAGCTCTCCAAGCTCAAGAAAGCCAACTCCAAAACTGATATCTATAGCCTTGGTGTTATCTTGTTAGAACTCCTAACCAGGAAGTCACCTGGGGTGTCTATGAACGGAGTAGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAATGGACAAATGAGGTTTTTGATGCGGACTTAATGAGAGACTCTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTACAGCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACACCCAGTTCTGGGGATGATTCTATAATATAG 2736 0.4327 MSSRDPSCALSLSLSLLTTKTILQLFLSISTSLPTHTPSFCFTDSKTSLLVMVAEKTNVTSCQFSQHEVGNTDHVSDKKKERWKKTPSKAHTSPCCFFFLFWVWTLVLSTCLKSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNLLTGAIPYSLANSSKLYSLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGPLPNSWGRSSKNDEFFRLRNLLLDHNFFTGNVPSSLGALRELNEISLSNNRFSGAIPNEIGSLSRLKTLDISNNSLNGSLPATLSNLSSLTLLNVENNLLENQIPGTLGTLHNLSVLILSRNQFSGHIPSSIANISTLKQLDLSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPPQLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHQHRKLSTKDIILIVAGVLLMVLIILCCILLFCLIRKRSTSKAENGRGVGRTGATRAEKGIPPVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDSSTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTPSSGDDSII* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1540 911 Gene3D Phosphorylase Kinase; domain 1 630 701 - -
Vra2g1540 911 SMART LRR_typ_2 393 416 IPR003591 -
Vra2g1540 911 SMART LRR_typ_2 195 218 IPR003591 -
Vra2g1540 911 SMART LRR_typ_2 369 392 IPR003591 -
Vra2g1540 911 SMART LRR_typ_2 345 368 IPR003591 -
Vra2g1540 911 SMART LRR_typ_2 219 243 IPR003591 -
Vra2g1540 911 SMART LRR_typ_2 417 440 IPR003591 -
Vra2g1540 911 PRINTS Leucine-rich repeat signature 246 259 - -
Vra2g1540 911 PRINTS Leucine-rich repeat signature 369 382 - -
Vra2g1540 911 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 75 903 - -
Vra2g1540 911 Pfam Protein tyrosine and serine/threonine kinase 627 892 IPR001245 GO:0004672|GO:0006468
Vra2g1540 911 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 75 903 - -
Vra2g1540 911 ProSiteProfiles Protein kinase domain profile. 624 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1540 911 SUPERFAMILY L domain-like 168 504 - -
Vra2g1540 911 Pfam Leucine rich repeat 346 406 IPR001611 GO:0005515
Vra2g1540 911 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Vra2g1540 911 CDD STKc_IRAK 630 895 - -
Vra2g1540 911 Pfam Leucine rich repeat N-terminal domain 133 169 IPR013210 -
Vra2g1540 911 Gene3D Ribonuclease Inhibitor 386 511 IPR032675 -
Vra2g1540 911 Gene3D Ribonuclease Inhibitor 288 385 IPR032675 -
Vra2g1540 911 Gene3D Ribonuclease Inhibitor 130 287 IPR032675 -
Vra2g1540 911 SUPERFAMILY Protein kinase-like (PK-like) 628 897 IPR011009 -
Vra2g1540 911 Gene3D Transferase(Phosphotransferase) domain 1 702 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1540 Vra-Chr2 23304980 23308414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1540 122 897 Receptor kinase-like Gene Family AT3G51740 63.671 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra2g1540 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1540 - - pvu:PHAVU_001G246800g 1501.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1540 2 23304980 23308414 Vra6g0551 6 4787320 4790686 PCT