Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g1540 | ATGTCTTCACGTGATCCTTCTTGTGCTCTCTCTCTCTCTCTCTCTCTCCTCACTACAAAAACCATCCTTCAACTGTTCTTGTCTATCTCCACATCACTTCCAACACACACTCCCTCTTTCTGTTTCACTGATTCAAAAACATCTCTTTTAGTTATGGTAGCGGAGAAAACCAACGTTACCTCTTGTCAGTTTTCTCAACATGAAGTAGGAAATACAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCATCCAAGGCGCACACCAGCCCGTGTTGTTTTTTCTTTCTCTTCTGGGTCTGGACTCTTGTTCTCTCCACCTGTTTGAAATCGGTTTTGTGCGAAGATGAGGGTTGGGATGGCGTGGTTGTGACGGCATCAAACTTCTTAGCACTCCAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGACTGAGAGGGCGTATCACTGATAAAATTGGGCAGCTTCAAGGTCTTAGAAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTTACAGGTTCCATCCCTTCTTCTTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCCAATTCCTCCAAACTTTATTCGCTTAACTTGAGTTTTAACTCTTTCTCTGGTCCTTTACCAGCTAGCTTAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAATAATCTATCTGGTCCCCTTCCTAACTCTTGGGGTCGGAGTTCTAAGAATGACGAGTTCTTTAGGCTTCGAAATTTGCTCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGCCTTAAGAGAACTCAATGAAATCTCCCTTAGTAATAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGATCTCTTTCTAGACTCAAGACACTAGACATTTCTAATAATTCCTTGAATGGGAGTTTGCCTGCTACTCTCTCTAATTTATCCTCGCTTACACTGCTGAATGTTGAGAACAACCTCCTAGAAAATCAAATCCCTGGAACTTTAGGGACTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTAGTGGGCATATTCCTTCTAGTATTGCAAACATTTCCACTCTTAAGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAACGTAGTCTTGATCTCTTCAATGTTTCTTATAATAGCCTCTCAGGTTCTGTTCCCCCTCAACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCGTGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCACCACCTCATGAAATGTCAAAACACCACCAGCATAGGAAGCTGAGTACCAAAGACATTATTCTCATAGTAGCAGGAGTTCTTCTCATGGTCCTGATCATACTTTGTTGCATCCTTCTGTTCTGTCTGATCAGAAAGAGATCAACATCAAAGGCCGAGAATGGCAGAGGTGTAGGGAGAACTGGAGCTACGAGGGCAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTGCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCGCTAAAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTGGGAAAAATTAGACACCCTAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCCAAAGGAAGTGTTGCTTCTTTCCTACACGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTCCATTCCCAGGAGAATATTATACATGGAAACCTCACATCCAGTAATGTATTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCCGAGCTCTCCAAGCTCAAGAAAGCCAACTCCAAAACTGATATCTATAGCCTTGGTGTTATCTTGTTAGAACTCCTAACCAGGAAGTCACCTGGGGTGTCTATGAACGGAGTAGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAATGGACAAATGAGGTTTTTGATGCGGACTTAATGAGAGACTCTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTACAGCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACACCCAGTTCTGGGGATGATTCTATAATATAG | 2736 | 0.4327 | MSSRDPSCALSLSLSLLTTKTILQLFLSISTSLPTHTPSFCFTDSKTSLLVMVAEKTNVTSCQFSQHEVGNTDHVSDKKKERWKKTPSKAHTSPCCFFFLFWVWTLVLSTCLKSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNLLTGAIPYSLANSSKLYSLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGPLPNSWGRSSKNDEFFRLRNLLLDHNFFTGNVPSSLGALRELNEISLSNNRFSGAIPNEIGSLSRLKTLDISNNSLNGSLPATLSNLSSLTLLNVENNLLENQIPGTLGTLHNLSVLILSRNQFSGHIPSSIANISTLKQLDLSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPPQLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHQHRKLSTKDIILIVAGVLLMVLIILCCILLFCLIRKRSTSKAENGRGVGRTGATRAEKGIPPVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDSSTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTPSSGDDSII* | 912 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g1540 | 911 | Gene3D | Phosphorylase Kinase; domain 1 | 630 | 701 | - | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 393 | 416 | IPR003591 | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 195 | 218 | IPR003591 | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 369 | 392 | IPR003591 | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 345 | 368 | IPR003591 | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 219 | 243 | IPR003591 | - | |
Vra2g1540 | 911 | SMART | LRR_typ_2 | 417 | 440 | IPR003591 | - | |
Vra2g1540 | 911 | PRINTS | Leucine-rich repeat signature | 246 | 259 | - | - | |
Vra2g1540 | 911 | PRINTS | Leucine-rich repeat signature | 369 | 382 | - | - | |
Vra2g1540 | 911 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 75 | 903 | - | - | |
Vra2g1540 | 911 | Pfam | Protein tyrosine and serine/threonine kinase | 627 | 892 | IPR001245 | GO:0004672|GO:0006468 | |
Vra2g1540 | 911 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 75 | 903 | - | - | |
Vra2g1540 | 911 | ProSiteProfiles | Protein kinase domain profile. | 624 | 895 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra2g1540 | 911 | SUPERFAMILY | L domain-like | 168 | 504 | - | - | |
Vra2g1540 | 911 | Pfam | Leucine rich repeat | 346 | 406 | IPR001611 | GO:0005515 | |
Vra2g1540 | 911 | Pfam | Leucine rich repeat | 197 | 256 | IPR001611 | GO:0005515 | |
Vra2g1540 | 911 | CDD | STKc_IRAK | 630 | 895 | - | - | |
Vra2g1540 | 911 | Pfam | Leucine rich repeat N-terminal domain | 133 | 169 | IPR013210 | - | |
Vra2g1540 | 911 | Gene3D | Ribonuclease Inhibitor | 386 | 511 | IPR032675 | - | |
Vra2g1540 | 911 | Gene3D | Ribonuclease Inhibitor | 288 | 385 | IPR032675 | - | |
Vra2g1540 | 911 | Gene3D | Ribonuclease Inhibitor | 130 | 287 | IPR032675 | - | |
Vra2g1540 | 911 | SUPERFAMILY | Protein kinase-like (PK-like) | 628 | 897 | IPR011009 | - | |
Vra2g1540 | 911 | Gene3D | Transferase(Phosphotransferase) domain 1 | 702 | 908 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g1540 | Vra-Chr2 | 23304980 | 23308414 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g1540 | 122 | 897 | Receptor kinase-like Gene Family | AT3G51740 | 63.671 | 0.0 | 944 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Vra2g1540 | PK_Tyr_Ser-Thr | 1.8e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g1540 | - | - | pvu:PHAVU_001G246800g | 1501.11 |