Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1530 ATGTCTCCGACCGTGGGAGTCAGCGCCCCACTATTGGGCGAGTCCAACGGAGCGGTGCAGCCGGCCTCCGTCCCCGGTGCGGTATTCAACGTGGCGACGAGCATAGTCGGCGCCGGAATCATGTCAATTCCGGCGATAATAAAGGTTCTTGGTGTGGTTCCCGCTATCGCCATGATTATCGTTGTGGCCGTGCTAGCGGAACTCTCTGTCGAGTTTCTCATGCGCTTCACGCACTCCGGCGAAACGACGACGTACGCCGGCGTCATGAGGGAAGCGTTCGGGTCGTCGGGAGCGTTGGTCGCACAAGCTTGCGTCATCATCACCAACGTTGGGGGCTTAATTCTTTACCTGATCATCATCGGGGATGTGCTATCTGGAAAGCAAGATGGAGGTGAAGTGCATTTGGGTATTCTGCAGCAGTGGTTTGGTATTCATTGGTGGAATTCCAGGGAATTTGCCCTTCTCTTCACTCTGGTCTTCGTCATGTTTCCATTGGTATTGTACAAACGTGTAGAGTCCTTGAAGTACAGTTCAGCAGTGTCAACTCTTCTTGCAGTGGCATTTGTTGGCATATGTAGTGGGTTGGCTATTTTTGCACTGGTGCAAGGAAAAACGCAGACTCCTAGATTGTTTCCTGGGTTGGACAACCAAACCTCATTCTTTGATCTATTTACTGCAGTTCCTGTTGTTGTCACAGCTTTCACATTTCATTTTAACGTGCATCCAATTGGGTTTGAGTTTGCCAAGCCATCTCAAATGACAACAGCAGTTAGATTAGCATTATTGCTTTGTGCTGCGATCTACATTACAGTAGGCCTATTTGGGTACCTATTATTTGGGGATTCAACACAATCAGACATTCTAATCAATTTTGACCAGAGTAATGATTCTGTGGTTGGTTCCGTGTTCAATACTTTGATCCGTGTAAGCTATGCGCTCCACATCATGCTTGTGTTTCCTCTCTTGAACTTCTCATTGAGATCCAACATAGATGAAGTTCTCTTCCCCAATAAGCCTATGCTAGCCACAGACAACAAAAGATTCATGATCCTCACCGTGGTGCTGCTTGTATTCTCCTACCTTGCTGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAATTTCTTGGATCAACATCGGCAGTGTGCCTTGCCTTCATTTTCCCTGGCTCTATCGTTTTACGGGATGCATGTGGTATAGCAACGAAAAGGGATAAAATTATTGCACTGATAATGATTATACTGGCCGTGGTNACAAGTGTGCTTGCCATTTCCACCAACATATATAATGTTTTTAGTAGCAAGTCATAA 1311 0.463 MSPTVGVSAPLLGESNGAVQPASVPGAVFNVATSIVGAGIMSIPAIIKVLGVVPAIAMIIVVAVLAELSVEFLMRFTHSGETTTYAGVMREAFGSSGALVAQACVIITNVGGLILYLIIIGDVLSGKQDGGEVHLGILQQWFGIHWWNSREFALLFTLVFVMFPLVLYKRVESLKYSSAVSTLLAVAFVGICSGLAIFALVQGKTQTPRLFPGLDNQTSFFDLFTAVPVVVTAFTFHFNVHPIGFEFAKPSQMTTAVRLALLLCAAIYITVGLFGYLLFGDSTQSDILINFDQSNDSVVGSVFNTLIRVSYALHIMLVFPLLNFSLRSNIDEVLFPNKPMLATDNKRFMILTVVLLVFSYLAAIAIPDIWYFFQFLGSTSAVCLAFIFPGSIVLRDACGIATKRDKIIALIMIILAVVTSVLAISTNIYNVFSSKS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1530 436 Pfam Transmembrane amino acid transporter protein 22 426 IPR013057 -
Vra2g1530 436 PANTHER AMINO ACID TRANSPORTER 3 434 - -
Vra2g1530 436 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1530 Vra-Chr2 23238594 23241139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1530 1 431 Amino Acid or Auxin Permease AAAP Family AT3G56200 58.565 7.51e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1530 - - gmx:100815694 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1530 2 23238594 23241139 Vra6g0542 6 4723962 4727009 PCT
Vra6g0541 6 4720425 4722938 Vra2g1530 2 23238594 23241139 PCT