Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1529 ATGGTTTCTAAAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTCTTACTAACTCTCATGCACTAAACAAAACATCGATCATAATAGATGCGTCAAAGTATATCCAGGAATTAAAGCAAAAGGTGGAAGAATTGAATCAAGACTTAGCCAATGCACAAACTTCAACTGACCAAAATACTTTGCCTATGGTCACAGTAGAAACCACGGAGAAGGGTTTTGTTATTGATGTTTTTTCAGCAAAGAGTTGTCCTGGTCTGTTTGTTTCGATATTGGAGTCATTTGAAGAGATGAGTCTTAATGTGCTTGAAGCTAGGGCTACTTGTACGGACACGTTTCGATTTCATGCTGTTGGAGGAAAAAACGAAGAAGAAGGTAAGAATATTGATGCACGAGCTGTGAAACAGGCAATGAGACAAGCAATAAAGAATTGGAGCCAAAATGCTGAACAAAAGTAA 471 0.3885 MVSKEQKRAALHEKLQLLRSLTNSHALNKTSIIIDASKYIQELKQKVEELNQDLANAQTSTDQNTLPMVTVETTEKGFVIDVFSAKSCPGLFVSILESFEEMSLNVLEARATCTDTFRFHAVGGKNEEEGKNIDARAVKQAMRQAIKNWSQNAEQK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1529 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 154 - -
Vra2g1529 156 PANTHER TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN 1 154 - -
Vra2g1529 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 65 IPR036638 GO:0046983
Vra2g1529 156 Coils Coil 150 156 - -
Vra2g1529 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1529 Vra-Chr2 23233979 23235610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1529 1 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 26.846 1.73e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1529 - - vra:106755903 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1529 2 23233979 23235610 Vra6g0539 6 4702072 4703712 PCT