Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1522 ATGGGGAAAAGAGGGAATGTGTTGATGCAGAAGTATGAATTTGGGAAACTATTAGGGCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAAGACTGGGGAGAGTGTTGCCGTTAAGGTGATTGAAAAGGAGAAAATTTTAAAAATTGGGTTGGTGGATCAAACAAAGCGAGAGATATCTATCATGAGACGGATTAAACACCCCAATGTTTTGCAACTGTTTGAGGTCTTGGCCACCAAGACCAAGATTTACTTCATCATGGAATATGCCAAAGGGGGCGAACTTTTTAACAAGGTGGCTAAAGGTAGATTAAGTGAGGCTAGGGCGAGGAAGTACTTTCAACAATTGGTCAGTGCAGTTGATTTTTGCCATAGCAAGGGCGTTTATCACAGGGATTTGAAGCCAGAGAACTTGCTTTTGGATGAGAATGGTGTTTTGAAGGTAGCAGATTTTGGGTTGAGTGCATTTGTTGAATCGCATCGACAAGACGATATGTTGCATACAGTTTGTGGAACTCCTGCATATGTGGCGCCTGAGGTTGTTAGTAGAAAGGGCTATAATGGAGCAAAATCTGATGTATGGTCTTGTGGAGTGATCTTATTTGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTAAATCTCATGTCACTGTATAGGAAAATAGGCAGGGCGGAATACAAATGTCCAAACTGGTTTTCAATTGAAGTGCGCAGATTGTTAGGGAAAATCCTTGACCCCAACCCAGATACCAGGATATCCATGGCAAAAGTTATGGAAAATTCGTGGTTCAGAAAAGGATTCAAACCCAATTCCGGTGAAGTGAAAAGAGAGTCTGCAAATGTGGATTTAGTTAATTCTGATCAAGTTTTTGGTTTGTGCGAGAATACAATCACTGCTTCTGTTGAGGCAGTTCAAGAATTGGTTGCTCCTGGACATTTAAATGCTTTTGACATAATTTCTCTATCTGCAGGGCTAGACTTGTCTGGCCTATTTGCTAACATTAGTGAACAGGAAGATATCAAATTTACATTCATGAGCTCTGCCTCATCTATCATGTCTACAGTGGAAGATATTGCTCGCATTTTGAGGATGGTGATCATTAAGAAGGATGGAGGGCTGCTGAAATTGGAGAGATCCAAGGCAGGTAGAAAAGAACCGCTTTCCATTGATGTTGAAATATTTGAAGTCGCTCCATCTTTCCATTTGGTTGAGATGAAATCTGGCGGTGATACATTAGAATTCCAGAAGATAGTGAAGGAAGATTTAAGACCAGCTCTCAAAGATATTGTTTTTGTTTGGCAAGATGAGCATTACTTGCAGCAACAGGATTGTACTCCTTAA 1350 0.4067 MGKRGNVLMQKYEFGKLLGQGNFAKVYHARDLKTGESVAVKVIEKEKILKIGLVDQTKREISIMRRIKHPNVLQLFEVLATKTKIYFIMEYAKGGELFNKVAKGRLSEARARKYFQQLVSAVDFCHSKGVYHRDLKPENLLLDENGVLKVADFGLSAFVESHRQDDMLHTVCGTPAYVAPEVVSRKGYNGAKSDVWSCGVILFVLLAGHLPFYDLNLMSLYRKIGRAEYKCPNWFSIEVRRLLGKILDPNPDTRISMAKVMENSWFRKGFKPNSGEVKRESANVDLVNSDQVFGLCENTITASVEAVQELVAPGHLNAFDIISLSAGLDLSGLFANISEQEDIKFTFMSSASSIMSTVEDIARILRMVIIKKDGGLLKLERSKAGRKEPLSIDVEIFEVAPSFHLVEMKSGGDTLEFQKIVKEDLRPALKDIVFVWQDEHYLQQQDCTP* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1522 449 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vra2g1522 449 Gene3D Transferase(Phosphotransferase) domain 1 4 317 - -
Vra2g1522 449 Pfam NAF domain 313 369 IPR004041 GO:0007165
Vra2g1522 449 PANTHER - 3 440 - -
Vra2g1522 449 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 440 - -
Vra2g1522 449 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1522 449 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
Vra2g1522 449 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Vra2g1522 449 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1522 449 Gene3D Kinase associated domain 1, KA1 318 435 - -
Vra2g1522 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vra2g1522 449 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1522 449 CDD CIPK_C 317 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1522 Vra-Chr2 23194170 23197314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1522 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 57.650 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra2g1522 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1522 K07198 - gmx:100801834 739.184