Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1516 ATGAATTCAGCATCTCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATAGACGAGGCAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTATGACCAAGAAGCAAACAAACCAACTGATAAGATACAAAGACGTCTAGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAAAAGGCCTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTCGAACGTGCAAGACAGCAGGCAACAAAACTGCAGGGGATGTACATAGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCAGGACCGGTAAATTCAGGAATTACAACCTTCGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACGGCTTTAAATGCTCATATCGGTGACATAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCGGATGTGTTTTATGTAATGTCTGGTATGTGGAAAACAACGGCTGAAAGATTTTTCCTTTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGGCCCCTGATTGAACTTCTCACAGAGCAACAACAGTTGGATATCTATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCTCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTTGCTGATAGTGTAGCAGCCGGACAGTTCATGGAAGGAACGTACATTCCACAGATGACTTGTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACCTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAG 1104 0.4601 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDEADMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQATKLQGMYIGGGLDSNHLGFAGPVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIELLTEQQQLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTCAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1516 367 SUPERFAMILY Leucine zipper domain 78 125 IPR046347 GO:0003700|GO:0006355
Vra2g1516 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vra2g1516 367 Pfam Seed dormancy control 169 243 IPR025422 GO:0006351|GO:0043565
Vra2g1516 367 PANTHER TRANSCRIPTION FACTOR TGA9 1 366 - -
Vra2g1516 367 Coils Coil 97 131 - -
Vra2g1516 367 PANTHER TRANSCRIPTION FACTOR TGA1 1 366 - -
Vra2g1516 367 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Vra2g1516 367 Gene3D - 77 133 - -
Vra2g1516 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Vra2g1516 367 Pfam bZIP transcription factor 76 121 IPR004827 GO:0003700|GO:0006355
Vra2g1516 367 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1516 Vra-Chr2 23139450 23144442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1516 1 367 Calmodulin-binding Proteins AT5G10030 69.648 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra2g1516 DOG1 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1516 K14431 - gmx:100793353 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1334 1 20775274 20780375 Vra2g1516 2 23139450 23144442 PCT