Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1514 ATGACACCTCTCTCAAAGCTCTTTCACAAGTTCTGTGCCGAAATTATAATCATATTAGCATCCCTGATAATAGAACTTATCATTCTGATTCAGAAACTAAAACCATCGCCACGCGCAATCAGCACCCAGCAATACCTGAAATTCATCGAGAAGAAGAACCCCACGATTCGCTACACAAAGGGGTTGTTGAAGGCGGAACAGGGTGGTGCTGCAGAGTGTAGGGTATGCCTGTGCGAATTGGAGGAAGGGGAAAAGATGAGGAAGCTGCAATGCCGTCACGTGTTTCACAGGGATTGTTTGGACAAGTGGTTGCAACAATATTGGGCCACGTGTCCTCTTTGTCGGAAACAAGTGGTGCCGGAAGATGTTGTGTTCAAGCACCGTCAGCATCAGAATCAAACAGAGGGAGGTTTTGATCGGAATCATGATGACAACCTTCCGTACTTTTTATCAGCATTTCGTCGTGGCAACACTCTGCACAGATATTTCTGA 492 0.4593 MTPLSKLFHKFCAEIIIILASLIIELIILIQKLKPSPRAISTQQYLKFIEKKNPTIRYTKGLLKAEQGGAAECRVCLCELEEGEKMRKLQCRHVFHRDCLDKWLQQYWATCPLCRKQVVPEDVVFKHRQHQNQTEGGFDRNHDDNLPYFLSAFRRGNTLHRYF* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1514 163 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vra2g1514 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 - -
Vra2g1514 163 PANTHER - 1 158 - -
Vra2g1514 163 SMART ring_2 73 114 IPR001841 -
Vra2g1514 163 SUPERFAMILY RING/U-box 51 121 - -
Vra2g1514 163 Pfam Ring finger domain 72 115 IPR001841 -
Vra2g1514 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1514 Vra-Chr2 23113105 23113889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1514 71 126 C3H Transcription Factor Family AT1G15100 57.143 4.55e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1514 K16282 - gmx:102661897 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1332 1 20741732 20742999 Vra2g1514 2 23113105 23113889 PCT