Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1511 ATGGAAAGAAATGGTGATGGGAAGGCTCAAGAATCAGAGAATCTACCTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGTACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGCATTCTTTGAAGCAGTTATTGGAGCTTATTGATCTTCGAGAAAATGTTTTCAGTGCTGTTGGATCTCATTCCCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGGTCTTCAAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCACCGTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTGGCTGCTGCAAAGACAATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTTCCAGTGCTATGGGAGCAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAGAATCTCTCCAGCAACACTGATAGATTCTGGAATGCCACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGGTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACAGCCGAGGAAACTAAACAACTTCTCAAACTTTTAAGCCCTGGCAATGATGCTGCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCGATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCGCCTGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGACGACAAAGCAGAATCTACCAGGGCCACAGATCCTTTGGCAGTTGAGCAGACATTACTTGAACAATTTAAAACTGGCTTGTCATTCCTTGTGCAGGAACGGACTATTGAAGCACTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAACTCTGATGCAAAACGTCTGCTTGTTGGTTTAATTACGATGGCTGCTAATGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGTAGTTTGTGGAGTGCACTTCAAGGCCGTGAAGGAATTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCGGAACAACAACAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTCATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAGGCAAGGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTTTGGCTGTTGAAAAATGGAAGTCCAAATGGAAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAACATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAGGGTAGTGCTGCCAGTGATGCAATTGATACAATGATTAAATTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGTGTCTGCTCTAGCGGGTATTTTTGAAACAAGGAAAGATGTGCGTGAGAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCAGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAGTTGCGGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACTAGAGTATTACGTGAAGGTACAATTTATGGAAAATCACAGGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTGTCAATGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCCAGGTCAGAAGTGAATGGTGCACACAGCAAGCCTGCTTGGGCAGTATTGGCTGAATTTCCTAAAAGCATCAGCCCGATAGTTCTGTCCATTACTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTAAAGATCAACCTATTGTTTTGGGAGACATTGTTGTTTCTGCCCCTGGATGTATACCTTCTATAGCTAAGAGGATAATCAATTCCGCTTCTAAAAATATAAAGGTCAAAATTGGTGGCGTGGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTCAATTTATCAAACTTGTGTGGTAATTTAGTTCAGTCTCTTGTTGATATACTTATTTCTTCACAGGCTACTTTGGATTATCAGCATGATGACAGCAGGGACGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCGAGTACTGGCACCACTATTGTTTCTGGTGCCAACTTAGCTATATGGTTACTAACTGTTCTTGCTTGCCACGATGAAAAATGTAAAACTGCAATAATGGAGGCGGGTGCAATTGAGTTTCTCAGTGACAGGATTGCAAATTGTTTCTCGCTGTACAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGCTGGCAATATTGTTTCAGGATAGGGATATTATACGAGCACATGCAACCATGAAATCGATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCTCAATCAATAGCTAGCTTAGTCTGTAATGGTAGCAGGGGAACGTTGCTGTCTGTGGCAAATTCTGGGGCAGCTGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTTTAGAATTGGCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCGGGCGCACCGTATTTATCACTTGGGCTTTTGACTCAGCTTGCTGTAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGTGCCCTAGAGGCACTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACAGAAGAAGCTGCTACAGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTACTACGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCCGCTGACCATATTAGAAATGCAGAGATTGCTCGACAAGCTGTCCAGCCCTTGGTGGAGATTCTTAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGCTATTGAGTGAAAACCCTTCAAAAGCACTCGCTGTTGCTGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATCCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTAGTCACTCTCCTTGTTAGTGAGTTTAGTCCTTCTCACCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGGCTACTTTACGGTAGGAATTACGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCAGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTACCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCAAAAGGACCACCAGCTGCTAAAGTTGTTGAACCCCTGTTTATGTTGCTAATAAGACAAGACTTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAGCATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTAGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCAGATCCTTCCATTCCTCATGCCTTATGGGAATCTGCGGCCTCGGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTGGAAGTTCCAGTTGCTGTTTTGGTTAGGTTGCTTCGATCTGGCTTAGAAAGTACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCCGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGTGATCTATTTCAGAACGAGAGTCTTGCTCGGTCAAGCGACGCAGTTTCAGCCTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAGCCAACTGAAGAAATGAAAGTTGTAGCAATATGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTTTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAATATCTTAAAGCCTTAAATTCTCTTTTTAGCAACTTCCCAAGACTGAGAGCTACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAGGCTGCATTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTACTGCAGTGTTTGCCAGGAACTTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCCAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTCGGAGCAGTATCTGGAGAGTACACTCTTGTGCCAGAAAGTAAGAGTGGCCCTTCGAGGAATTTAGAAATAGAATTCCAGTGGTCGAACAAGTGA 6402 0.4261 MERNGDGKAQESENLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEHSLKQLLELIDLRENVFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSNTDRFWNATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTAEETKQLLKLLSPGNDAAVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDKAESTRATDPLAVEQTLLEQFKTGLSFLVQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWSALQGREGIQLLISLLGLSSEQQQECAVALLCLLSHENDESKWAITAAGGIPPLVQILESGSAKAREDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTTLLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIDTMIKLLSSTKEETQAKSVSALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEVAEKAVAEEVILAATRVLREGTIYGKSQAAAAIARLLHSKRQVDYAVTDCVNRAGTVLALVSFLDFAVNGLSSTSEALEALAMLSRSEVNGAHSKPAWAVLAEFPKSISPIVLSITDSTPVLQDKAIEILSRLCKDQPIVLGDIVVSAPGCIPSIAKRIINSASKNIKVKIGGVAVLICAAKVNHQRLVEDLNLSNLCGNLVQSLVDILISSQATLDYQHDDSRDVISICRHTKEANDGKSSTGTTIVSGANLAIWLLTVLACHDEKCKTAIMEAGAIEFLSDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELAEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPYLSLGLLTQLAVDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAEIARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVTLLVSEFSPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNESLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLVPESKSGPSRNLEIEFQWSNK* 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1511 2133 Pfam C2 domain 2012 2108 IPR000008 -
Vra2g1511 2133 SMART C2_3c 2013 2109 IPR000008 -
Vra2g1511 2133 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2011 2130 IPR035892 -
Vra2g1511 2133 Gene3D - 591 990 IPR011989 -
Vra2g1511 2133 SUPERFAMILY ARM repeat 46 273 IPR016024 -
Vra2g1511 2133 MobiDBLite consensus disorder prediction 1 38 - -
Vra2g1511 2133 Gene3D - 1160 1346 IPR011989 -
Vra2g1511 2133 SUPERFAMILY ARM repeat 1618 2010 IPR016024 -
Vra2g1511 2133 Gene3D - 1003 1145 IPR011989 -
Vra2g1511 2133 SUPERFAMILY ARM repeat 197 588 IPR016024 -
Vra2g1511 2133 Gene3D - 1347 1502 IPR011989 -
Vra2g1511 2133 SMART arm_5 505 545 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 798 840 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1839 1879 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 464 503 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 75 116 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1294 1334 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 117 157 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1211 1252 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1421 1461 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1547 1589 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1463 1503 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 547 587 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 248 289 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 291 340 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1380 1420 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 710 751 IPR000225 GO:0005515
Vra2g1511 2133 SMART arm_5 1712 1751 IPR000225 GO:0005515
Vra2g1511 2133 Gene3D - 393 590 IPR011989 -
Vra2g1511 2133 CDD C2 2014 2104 - -
Vra2g1511 2133 SUPERFAMILY ARM repeat 857 1141 IPR016024 -
Vra2g1511 2133 Gene3D - 1779 2010 IPR011989 -
Vra2g1511 2133 SUPERFAMILY ARM repeat 1168 1550 IPR016024 -
Vra2g1511 2133 Gene3D - 21 387 IPR011989 -
Vra2g1511 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1807 1850 IPR000225 GO:0005515
Vra2g1511 2133 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vra2g1511 2133 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2133 - -
Vra2g1511 2133 Gene3D C2 domain 2011 2133 IPR035892 -
Vra2g1511 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1178 1222 IPR000225 GO:0005515
Vra2g1511 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vra2g1511 2133 SUPERFAMILY ARM repeat 594 942 IPR016024 -
Vra2g1511 2133 Gene3D - 1683 1778 IPR011989 -
Vra2g1511 2133 Gene3D - 1505 1682 IPR011989 -
Vra2g1511 2133 Coils Coil 277 297 - -
Vra2g1511 2133 ProSiteProfiles C2 domain profile. 1995 2110 IPR000008 -
Vra2g1511 2133 Pfam Armadillo/beta-catenin-like repeat 505 545 IPR000225 GO:0005515
Vra2g1511 2133 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1511 Vra-Chr2 23070946 23081338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1511 476 596 U-box Gene Family AT2G23140 41.803 6.44e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1511 - - gmx:100816765 3762.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1328 1 20692677 20703856 Vra2g1511 2 23070946 23081338 PCT