Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1498 ATGACAACAGTTATGGATATGTACAATGATCAAGAGCTGATGAAAGCACTTGAACCTTTTATGAAAACCGATTCCTCCATAACTTACCCTTCCTTATCTTCTCCAAACTATGACCAAAAGCCTCTAATAAATCAAGCCAGTTCCATCAAACTCAACCAACTCACCCCATCTCAAACGTTCCAGATTCAAGCCCAAATCCAGGTTACACGCGCCCAGTTTCTTAGCCCAAAGCCCGTTCCCATGAAGCAAGTGAGTGGTCGTGTTCTTTCCAAGCCCACAAAGCTTTACCGTGGGGTCAGGCAGAGACACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGCACTCGTCTCTGGCTTGGTACATTCGAAACCGCTGAAGAAGCTGCTTTAGCATACGACAACGCAGCGTTTAAGCTCAGAGGAGAAAACGCCAGACTCAACTTCCCTCATCTACGTCACCATGGACCAAGCGTCTATGGTGAGCTCGGGACCTACAAGCCTCTCCCCTCTGCAGTGGAAGCCAAGCTCGAAGCCATTTGTCAAAGCTTGGCCATCACTACACACAAGGAAGAAACAGCAACAACATCGGAGTTTGAGGATGTTAAGGTGGGGATTCAAACAACATCCTCGCCCTTGTCGGATGAATGTTCTTCCTCCTCTTCTTCTGCTGGTTCCTCTTCACCCGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTTGTGAAGCAATGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTTTATCCGAGTCATCATGA 816 0.4792 MTTVMDMYNDQELMKALEPFMKTDSSITYPSLSSPNYDQKPLINQASSIKLNQLTPSQTFQIQAQIQVTRAQFLSPKPVPMKQVSGRVLSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGPSVYGELGTYKPLPSAVEAKLEAICQSLAITTHKEETATTSEFEDVKVGIQTTSSPLSDECSSSSSSAGSSSPESDITFLDFSDSCEAMDNLGLDLEKYPSVEIDWAALSESS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1498 271 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Vra2g1498 271 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 35 266 - -
Vra2g1498 271 CDD AP2 94 154 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Vra2g1498 271 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Vra2g1498 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 35 266 - -
Vra2g1498 271 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1498 Vra-Chr2 22951569 22952954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1498 4 271 AP2-EREBP Transcription Factor Family AT4G39780 52.817 5.43e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra2g1498 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1498 K09286 - gmx:106796800 374.4