Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1497 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTTCCCTAACAGTTTTTCCAACACCTGCACAAAAAAAGCCACCGGCAGCACCAGGAGGGTACATTTCTATTTCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGACCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCATCTCCTACCCATCTTAAATCCGCACCTTCTTTCTCTCAGGAGCAAAACTCTTGGATTCTTCACCATCCCTCCGCATTAGACATGTTTGACCAAATTATTGATGCGTCAAAGGGAAAACAAATTGTCATGTTCCTCGACTATGATGGCACTCTTTCCCCAATTGTTGAAGATCCTGACCGTGCTTTCATGTCTCACTCGATGAGGAAAACAGTGAGGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTGACCGGAAGATGCAAAGACAAGGTATACAATTTTGTTCAGTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGCGATTTTCTTCCCATGATAGATGAGGTGTACCAACAATTGGTTGAGAAGACCAAATCAACTCCTGGAGCCATGGTTGAGAACAACAAATTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGACTACCCGAAGCTCCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCGACTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTATTAGAGTCCCTTGGTTTGGCCAATTGCAGTGATGTATTTCCTGTTTATATTGGCGATGATCGATCAGATGAAGATGCTTTCAAGAAATTGAGAGACAGAGGACAAGGTTTTGGTATTCTTGTCTCCAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCAAACGAGGTGATGAGCTTTCTTCAACGCTTGGTGGAGTGGAAACATATGTCCCAACGAGCACGTTCCCGGGTGTAA 1104 0.4339 MTQQNVVVSDTKSGVSLTVFPTPAQKKPPAAPGGYISISRRRVLKNLEINGDQRINAWVESMRASSPTHLKSAPSFSQEQNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMSFLQRLVEWKHMSQRARSRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1497 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 367 IPR044651 GO:0004805|GO:0005992
Vra2g1497 367 CDD HAD_TPP 107 347 - -
Vra2g1497 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
Vra2g1497 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Vra2g1497 367 TIGRFAM T6PP: trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Vra2g1497 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 367 - -
Vra2g1497 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 108 319 IPR006379 -
Vra2g1497 367 Gene3D - 106 204 IPR023214 -
Vra2g1497 367 Gene3D - 210 366 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1497 Vra-Chr2 22936884 22940233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1497 97 355 Trehalose Biosynthesis Gene Families AT1G06410 26.259 4.77e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1497 K01087 - gmx:100794430 685.256