Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1489 ATGTGCGGAATCCTCGCAGTGTTGGGTTGCGTCGACAAATCTCAGGCCAAGCGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGCATACATTGCCATGATGATTGTTACCTTGCTCATCAAAGGCTTGCTATTGTTGACCCTACTTCAGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTGTTGTCACCGTTAATGGGGAGATATACAACCACAAACAATTGAGACAGAAACTGAGTTCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAGTATGGGGAGGAATTTGTTAACATGCTGGATGGGATGTTCGCCTTTATTCTTCTTGATACTCGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGCTGGGGTCTTGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAGATTCATGTCATTTCCTCCGGGGCATATATATTCCAGCAAACAAGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCGGAGATTGTTCCATCAACTCCCTATGATCCAATACTTTTGCGTGAGACCTTCGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGAGTTCTTTTGTCGGGAGGATTGGACTCATCACTTGTTGCCTCTATGGTCAATCGTTATTTAGCGGAATCTGAGGCGGCTCGTCAATGGGGATCACAGTTGCATACTTTCTGTATTGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCACGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGACGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGGAAAATTAAATCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTTCATAAGGCACCTAACAAGAAAGAGCTTCACGAAGAAACTTGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAGTCAACTGCAGCATGGGGAGTTGAGGCCCGTGTACCATTCTTGGATAAAGAATTTATCGAAGTAGCAATGAGTATGGATCCGGAGTGGAAAATGATAAGGCGTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGAAAAGAATCCATATTTACCAAAGCACATATTATACAGGCAGAAGGAACAGTTCAGTGACGGGGTTGGTTACAGTTGGATTGATGCCTTGAAGGATCACGCTGATAAACAAGTCCCAGATGCAACAATGCATGCTGCCAGTTTTATTTACCCTGAAAACACTCCTACTACAAAAGAAGGATACCTCTACAGGACAATTTTTGAGAAGTTCTTTCCGAAGAATGCAGCAAGGGCAACAGTTCCAGGGGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCGGCATGGTCCAAAAATCTTGACCCTTCTGGTCGTGCGGCGCTTGGTGTTCATGAAGCTTCATATGATACGGTGGATACCAAAGTTGACAAACCCAAAAATGGAACACTTTAA 1710 0.4316 MCGILAVLGCVDKSQAKRARIIELSRRLRHRGPDWSGIHCHDDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLRQKLSSHQFRTGSDCEVIAHLYEEYGEEFVNMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGLDGSTWFASEMKALSDDCERFMSFPPGHIYSSKQGGLRRWYNPPWFSEIVPSTPYDPILLRETFERAVVKRMMTDVPFGVLLSGGLDSSLVASMVNRYLAESEAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKKELHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFIEVAMSMDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHADKQVPDATMHAASFIYPENTPTTKEGYLYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHEASYDTVDTKVDKPKNGTL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1489 569 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 483 - -
Vra2g1489 569 PANTHER ASPARAGINE SYNTHETASE 1 565 - -
Vra2g1489 569 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 366 IPR006426 GO:0004066|GO:0006529
Vra2g1489 569 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Vra2g1489 569 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Vra2g1489 569 Gene3D HUPs 197 514 IPR014729 -
Vra2g1489 569 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 565 - -
Vra2g1489 569 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Vra2g1489 569 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Vra2g1489 569 PIRSF Asn_synthetase_glu-h 355 517 IPR006426 GO:0004066|GO:0006529
Vra2g1489 569 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Vra2g1489 569 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Vra2g1489 569 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Vra2g1489 569 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1489 Vra-Chr2 22842078 22847705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1489 69 164 PRT Gene Family AT2G16570 33.962 1.97e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1489 K01953 - gmx:732660 1115.14