Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1485 ATGCCCAATTCCAACTCCAACCCAAAGGCAGATCCGATCCTAAATTTTAACACCCAGGATCCGAATACAACTGCAAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTGCAGCACTTCCTATCTCAATCCATCAGCACCAGCACTCCTCTCACCACCGATCAAATTGCTATGGTCTCCACCCACATCATCTCATCCATCCACCAAATCATCGTCAACGGTGCCGCCCTCGTAACTTACTCTCAACATGCCACCGCCGCCGTCACACCAGATGCGTTGTCGTATCCGAAGCCGGAACCCTCCGCCACCGATAAAAACAAGCAACTCCTCGATTCAAACCTCGAACCTCCCGAGGATGGTGACGGCGTCAAAGAAGACGATTGGGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGATTCCGGCGCGACGCGAATCTCCGCATGCACATGCGAGCGCACGGAGACCAGTTCAAGACGCCGGAAGCACTGGCGAGGCCGTCAGAGACCGGCGCGGCGAAGGGCGCGATGCAGTTCTCTTGTCCGTTCGAAGGCTGCAACCGGAACAAGCTACACCGGCGGTTTAGGCCGCTGAAGTCGGCGGTGTGCTTGAAGAACCACTTCAAGCGCAGCCACTGTCCAAAGATGTACTCGTGCACCCGGTGCCACAAGAAGCACTTCTCGGTGCTTTCGGATTTGAAAAGCCACGCGAAGCACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCATGTTCTCGAGGAAGGACAAGTTGTTCGGCCACATTGCTCTGTTTGAAGGCCACGCGCCCGCGCTCGCGTGCGACGAAGAGGGTAAAGGGAAGCAAGTGGCGGAGGATGATAACGAAAATCCAATTTTGACGACTGACAGCGGATTTGAATTGGTTAATTGCTTTGGGGATGAGGAGTTGCCGGAAGGGTTTTTTTATGATTTTGGATCCATTGATGACTACTGTTTAGAGGAAGTGTTAGGGTTTCCGAGTAATTGA 1068 0.5431 MPNSNSNPKADPILNFNTQDPNTTANPQLPLQNLSQVRTRIDSLQHFLSQSISTSTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHATAAVTPDALSYPKPEPSATDKNKQLLDSNLEPPEDGDGVKEDDWEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGAAKGAMQFSCPFEGCNRNKLHRRFRPLKSAVCLKNHFKRSHCPKMYSCTRCHKKHFSVLSDLKSHAKHCGECRWKCTCGTMFSRKDKLFGHIALFEGHAPALACDEEGKGKQVAEDDNENPILTTDSGFELVNCFGDEELPEGFFYDFGSIDDYCLEEVLGFPSN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1485 355 MobiDBLite consensus disorder prediction 98 131 - -
Vra2g1485 355 Gene3D Classic Zinc Finger 151 174 - -
Vra2g1485 355 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 17 353 - -
Vra2g1485 355 MobiDBLite consensus disorder prediction 1 26 - -
Vra2g1485 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Vra2g1485 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Vra2g1485 355 SMART c2h2final6 198 231 IPR013087 -
Vra2g1485 355 SMART c2h2final6 236 258 IPR013087 -
Vra2g1485 355 SMART c2h2final6 151 173 IPR013087 -
Vra2g1485 355 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Vra2g1485 355 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 353 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1485 Vra-Chr2 22820505 22821842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1485 125 296 C2H2 Transcription Factor Family AT1G34370 56.818 5.08e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g1485 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1485 - - gmx:100809135 522.702