Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1483 ATGGATTTGGTATTTGTTCTTTTGCTATTGACTAGTGTGTGCTCTTCTGGGTTGGCTGGGCTTGATTCACAAGAAGATGCGCTGTATGCGTTGAAGTCATCATTGAATGCTTCTACCAGCCAGCTTACAAACTGGAATAAAAATCTAGTTGACCCTTGTACTTGGTCCAATGTTGAATGTGACCAGAATAACAACGTTATTCGAGTTTCACTAGAATTTATGGGATTCACAGGATCCTTGACACCAAGAATAGCATCTCTGAAAAGTCTTGAAACTCTTTCTTTGCAAGGTAATAACATCACTGGTGACATTCCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTAGATTTGGAAAACAACAAATTAACTGGTGAAATTCCCTATTCACTTGGTAATCTTAGAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTCAGTGGAACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTAGTGGGAAGATTCCGGAGCGGTTGTTCAGCATTCCTACATACAATTTCACTGGAAATAATTTGAATTGTGGAGTGAGTTATCATCATCTTTGCTCATCTGATAATGCAGTTCAAGGTTCGTCTCATAAAACAAAAGTAGGCCTCATAGTTGGAATAGTTGCAGGTTTAGGTGTTATTTTTTTTCTTGGTTGTCTGCTGTTCTTCTGGTACAAGGGGTTCAAGCGTGAAATTTTTGTAGATGTTCCAGGTGAGGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGTTTTGGAAAAGTTTATAAAGGTATTCTAGCAGATGGTACAAAAGTTGCTGTTAAAAGGTTAACCGATTATAAAAGCGCTGCGGGTGATGCCGCGTTTCAGCGTGAAGTGGAGTTGATAAGCGTAGCTGTCCATAGGAATCTGTTACGGCTCATTGGTTTTTGTACTACTACAACTGAACGTCTCTTAGTTTATCCCTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAGACCTGGGGAACCCGTTTTGGATTGGCCTACTAGAAAACGAGTGGCTCTAGGAACAGCCCGCGGCCTAGAATATCTTCACGAGCAGTGTAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAACCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTTCGAAATACTACTGTGACAACTCAAGTTCGCGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACAGGAAAATCTTCAGAAAGGACTGATATTTTTGGTTATGGGATTATGCTTTTGGAACTTGTTACAGGTCAACGTGCTATTGACTTTTCACGTTTGGAAGACGAGGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGATTAGATGTTATTGTGGACTGCAACCTGAAGAAAAATTACATAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTACTCTGCACACAAGCATCTCCGGAAGATCGACCAGCAATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCTGAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGCAAGATTACGAGAGACTACAGAGAAGAATGAACTGGGGAGAAGATTCAATGAATAACCAAGACGCCATTGAGTTGTCAGGTGGAAGATAA 1815 0.4006 MDLVFVLLLLTSVCSSGLAGLDSQEDALYALKSSLNASTSQLTNWNKNLVDPCTWSNVECDQNNNVIRVSLEFMGFTGSLTPRIASLKSLETLSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGNLRKLQFLTLSQNNLSGTIPESLASLPSLINVMLDSNDLSGKIPERLFSIPTYNFTGNNLNCGVSYHHLCSSDNAVQGSSHKTKVGLIVGIVAGLGVIFFLGCLLFFWYKGFKREIFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYKSAAGDAAFQREVELISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYRLRELRPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEPVVGDFGLAKLVDVRNTTVTTQVRGTMGHIAPEYLSTGKSSERTDIFGYGIMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKRLDVIVDCNLKKNYIIGEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVATRQDYERLQRRMNWGEDSMNNQDAIELSGGR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1483 604 Gene3D Phosphorylase Kinase; domain 1 250 357 - -
Vra2g1483 604 PANTHER LRR RECEPTOR-LIKE KINASE 2 604 - -
Vra2g1483 604 Pfam Protein kinase domain 282 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1483 604 Gene3D Ribonuclease Inhibitor 20 219 IPR032675 -
Vra2g1483 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Vra2g1483 604 SMART serkin_6 281 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1483 604 SUPERFAMILY L domain-like 23 194 - -
Vra2g1483 604 SUPERFAMILY Protein kinase-like (PK-like) 260 556 IPR011009 -
Vra2g1483 604 Gene3D Transferase(Phosphotransferase) domain 1 358 575 - -
Vra2g1483 604 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Vra2g1483 604 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vra2g1483 604 ProSiteProfiles Protein kinase domain profile. 281 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1483 604 Pfam Leucine rich repeat 86 124 IPR001611 GO:0005515
Vra2g1483 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1483 Vra-Chr2 22800247 22807168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1483 1 604 Receptor kinase-like Gene Family AT5G10290 71.382 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra2g1483 Pkinase 7.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1483 - - gmx:100786654 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1483 2 22800247 22807168 Vra7g0925 7 20943279 20952611 PCT