Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1482 ATGGCCATCTCTACTTTTGCCAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGATGTTTGCGGGGTCGACCGTGGGAAAGATTGCATCATTCAAGAATAATGTTTCAAGCAAGCCAAGCTTCATGGCTGCCCCAAATTCAACCTTCTGTTCTCGAGATTCCTCTAGTGCTCTTTTTGACAAAGTTTCTTTGCCGAAATTACATGGTCGCAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGATTACTATTCTATCCTTGGGGTCTCAAAAAATTCTAGCAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTTAACAAAGAACCTGATGCAGAAAAGAAATTTAAAGAAATTAGTAATGCATACGAGGTCTTGTCAGATGATGAGAAAAGATCCATATATGATACATATGGAGAGGCTGGTCTTAAAGGTTCAGGAATGGGTATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGCATGGGGGGCAGCAGAAGTTCTTGGAATGGAGCAGTTGAGGGTGAAGACGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGATCGAGATTCGGCGATTAGAGAACTGTGGAACTTGCAATGGTTCAGGAGCTAAACCAGGGACCAAATCATCTAAGTGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTTCAATCGACGAGGACTCCATTAGGCATCTTTCAGCAGTCTATGACTTGCTCTTCTTGCAATGGAGCTGGTGAAATTTCAACACCTTGCAATACATGTTCCGGGGAAGGTCGAGTGAGGAAGACAAAGCGGATAAGTATCAAGGTTCCTGCTGGTGTGGATTCTGGAAGCCGGTTAAGGGTCCGCAATGAAGGTAATGCTGGAAGGCGTGGGGGTCCTTCTGGCGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCGGTGCTTAAACGGGATGACACAAACATTTTATACACCTGTAAAATATCTTACATTGATGCAATCTTGGGGACTACTGTTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGAGTAAGAAAGGTGTTCCCCTGCTGAACAAGAAGAATATGAGGGGTGATCAATTGGTTAGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGACGAGAGAAAACTTATTGAGGAACTTGCTGATTTAAGTAAAGGCAAGACTGCTGCCACCAGTGGTAGGAGATAA 1323 0.4414 MAISTFASTSATQWGIRPQMFAGSTVGKIASFKNNVSSKPSFMAAPNSTFCSRDSSSALFDKVSLPKLHGRRGSRLIVRADADYYSILGVSKNSSKSEIKSAYRKLARSYHPDVNKEPDAEKKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGSRSSWNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLENCGTCNGSGAKPGTKSSKCSTCGGQGRVVQSTRTPLGIFQQSMTCSSCNGAGEISTPCNTCSGEGRVRKTKRISIKVPAGVDSGSRLRVRNEGNAGRRGGPSGDLFVVLEVIPDPVLKRDDTNILYTCKISYIDAILGTTVKVPTVDGMVDLKIPAGTQPSSTLVMSKKGVPLLNKKNMRGDQLVRVQVEIPKKLSKDERKLIEELADLSKGKTAATSGRR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1482 440 Pfam DnaJ central domain 221 284 IPR001305 GO:0031072|GO:0051082
Vra2g1482 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Vra2g1482 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 342 IPR008971 GO:0006457|GO:0051082
Vra2g1482 440 SUPERFAMILY Chaperone J-domain 80 180 IPR036869 -
Vra2g1482 440 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Vra2g1482 440 TIGRFAM DnaJ_bact: chaperone protein DnaJ 83 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vra2g1482 440 ProSiteProfiles dnaJ domain profile. 83 147 IPR001623 -
Vra2g1482 440 Gene3D - 331 439 - -
Vra2g1482 440 Hamap Chaperone protein DnaJ [dnaJ]. 80 434 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vra2g1482 440 CDD DnaJ 83 136 IPR001623 -
Vra2g1482 440 SMART dnaj_3 82 139 IPR001623 -
Vra2g1482 440 CDD DnaJ_C 192 414 - -
Vra2g1482 440 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Vra2g1482 440 PRINTS DnaJ domain signature 85 103 IPR001623 -
Vra2g1482 440 PRINTS DnaJ domain signature 103 118 IPR001623 -
Vra2g1482 440 PRINTS DnaJ domain signature 119 139 IPR001623 -
Vra2g1482 440 PRINTS DnaJ domain signature 139 158 IPR001623 -
Vra2g1482 440 ProSiteProfiles Zinc finger CR-type profile. 208 289 IPR001305 GO:0031072|GO:0051082
Vra2g1482 440 Pfam DnaJ C terminal domain 196 411 IPR002939 -
Vra2g1482 440 PANTHER BNAA01G34580D PROTEIN 42 435 - -
Vra2g1482 440 Gene3D - 221 284 - -
Vra2g1482 440 Gene3D DnaJ domain 80 184 IPR036869 -
Vra2g1482 440 CDD DnaJ_zf 221 284 IPR001305 GO:0031072|GO:0051082
Vra2g1482 440 Pfam DnaJ domain 83 144 IPR001623 -
Vra2g1482 440 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 435 - -
Vra2g1482 440 Gene3D - 191 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1482 Vra-Chr2 22790042 22794867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1482 84 146 C2H2 Transcription Factor Family AT1G74250 44.928 1.14e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1482 K03686 - gmx:100786143 761.525