Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g1469 | ATGAAGAGACTTAGCAGCTCAGATTCTTCTTCCACTCCCCTCATCACAATTTGCCCGTCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGATGTGTTGAAGAAGTGGGGCATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTTAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACAGGAAGCGGTGTTTCCGTGAAGGAAGAGATAATGATGCCTGACTCGGAAGACAAAACAACGATGGAACAAAGTAAGAGCGAGCCGAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCCTCGCTCTTTCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCACCGGAATCTTCCTCAATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA | 906 | 0.4801 | MKRLSSSDSSSTPLITICPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSEDKTTMEQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS* | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g1469 | 301 | ProSitePatterns | 'Homeobox' domain signature. | 91 | 114 | IPR017970 | GO:0000981|GO:0006355 | |
Vra2g1469 | 301 | Coils | Coil | 129 | 163 | - | - | |
Vra2g1469 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE | 1 | 240 | - | - | |
Vra2g1469 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE | 251 | 296 | - | - | |
Vra2g1469 | 301 | MobiDBLite | consensus disorder prediction | 172 | 191 | - | - | |
Vra2g1469 | 301 | Gene3D | - | 55 | 123 | - | - | |
Vra2g1469 | 301 | Pfam | Homeobox associated leucine zipper | 116 | 157 | IPR003106 | GO:0006355|GO:0043565 | |
Vra2g1469 | 301 | SMART | HOX_1 | 59 | 120 | IPR001356 | GO:0003677 | |
Vra2g1469 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 116 | IPR001356 | GO:0003677 | |
Vra2g1469 | 301 | MobiDBLite | consensus disorder prediction | 156 | 198 | - | - | |
Vra2g1469 | 301 | SUPERFAMILY | Homeodomain-like | 46 | 118 | IPR009057 | - | |
Vra2g1469 | 301 | CDD | homeodomain | 61 | 117 | IPR001356 | GO:0003677 | |
Vra2g1469 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 251 | 296 | IPR045224 | GO:0003700 | |
Vra2g1469 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 240 | IPR045224 | GO:0003700 | |
Vra2g1469 | 301 | PRINTS | Lambda-repressor HTH signature | 87 | 96 | IPR000047 | GO:0003677 | |
Vra2g1469 | 301 | PRINTS | Lambda-repressor HTH signature | 96 | 112 | IPR000047 | GO:0003677 | |
Vra2g1469 | 301 | Pfam | Homeodomain | 61 | 114 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g1469 | Vra-Chr2 | 22683300 | 22685678 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g1469 | 1 | 301 | Homeobox Transcription Factor Family | AT2G22430 | 48.910 | 2.99e-73 | 226 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vra2g1469 | Homeodomain | 2.4e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g1469 | K09338 | - | gmx:100777924 | 412.92 |