Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1469 ATGAAGAGACTTAGCAGCTCAGATTCTTCTTCCACTCCCCTCATCACAATTTGCCCGTCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGATGTGTTGAAGAAGTGGGGCATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTTAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACAGGAAGCGGTGTTTCCGTGAAGGAAGAGATAATGATGCCTGACTCGGAAGACAAAACAACGATGGAACAAAGTAAGAGCGAGCCGAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCCTCGCTCTTTCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCACCGGAATCTTCCTCAATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA 906 0.4801 MKRLSSSDSSSTPLITICPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSEDKTTMEQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1469 301 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Vra2g1469 301 Coils Coil 129 163 - -
Vra2g1469 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 240 - -
Vra2g1469 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 251 296 - -
Vra2g1469 301 MobiDBLite consensus disorder prediction 172 191 - -
Vra2g1469 301 Gene3D - 55 123 - -
Vra2g1469 301 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Vra2g1469 301 SMART HOX_1 59 120 IPR001356 GO:0003677
Vra2g1469 301 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Vra2g1469 301 MobiDBLite consensus disorder prediction 156 198 - -
Vra2g1469 301 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Vra2g1469 301 CDD homeodomain 61 117 IPR001356 GO:0003677
Vra2g1469 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 251 296 IPR045224 GO:0003700
Vra2g1469 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 240 IPR045224 GO:0003700
Vra2g1469 301 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Vra2g1469 301 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Vra2g1469 301 Pfam Homeodomain 61 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1469 Vra-Chr2 22683300 22685678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1469 1 301 Homeobox Transcription Factor Family AT2G22430 48.910 2.99e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra2g1469 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1469 K09338 - gmx:100777924 412.92