Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1468 ATGAACAGAAACCAAGAAGAAAGTGATATTGGAGTGACTAACTGTAAGAGAACACGAAGAGCCTCTGACAAGACAAAGACCATACACTTGGCCATTGATATAAAGCATCCTTCACTTTACTTTGCTTTCAAACAGATTAGGGTTTTCATCTTTCAATTTCATCTTTCAATTTCATCTCATTGCTTCCTCATGAAGAAATCTTTCTACCCTAACTCCTCCCCGACGTCTCAGGCCACTCATCCCTGTCTTGATTTTCACCCACAATGGAGGCCGCGCTCATACCCACGTGCACACGCGGCACGCGTCCACCGTCCGCCGGAGACTTATCTAAAGGTGAAGCCTTATTTTAAGGTGGAGCTCCGCCTCGGCCTCCGTCCTTCCAGCCGCGAGGACATCGAGACCCTGATCAAAGACTGCAAGCACAAGGAGCAGTCTTTTACCTTTTACCCTGACGACGAGGTCGCTGCCGTGCTCAGTTACAAGAATTGGGAGGAGGCGTGCGACGCGGCCGTTTGGTTCTGGGAGACGCTGCTGTTGGAGAAACACGATTATACGCCGGAGCTGGACTCCAACGCTTCGGTGACGGACAGTCTGGATGGTCGCCTTCGAGTGCTGTTCAGGAGTCACGTGATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTGGAGGAGAGTGAACGGTTGTCGAAGGAAATTGAGAGGGTTTCACGTTTGCGGAGGAATCGCTGGCATTTTAGCTCTACTAACCGCAATGTTGACCCGAGGAGAGGGCTCGTTGATGAGAAAGACCAGGTTGAAAGGAGGTTGAAGGAGTTCGACTCTGCGATGGATTGTATACTGAAGCATCTGGCTGAGGGCGCTGACATGGAGGGTGCCGACGTGGAGGTGGAGGATCGTCGGAGTGTGAATGTGTTGAAGTTTGATGGACGTTGTGATTGGAAGCGCATTCACTGCCTGATCAGAAGGGAGTGTCGGAGACTGGAGGATGGATTACCCATTTATGCTTATAGGAAGGATATTCTTCGGGAGATACATGATCAGAAGATGGTGGTATTAATTGGAGAGACTGGATCTGGTAAGAGTACACAGTTAGTTCAGTTTCTAGCTGATTCTGGCATTGGTGCTGATGAATCCATTGTATGCACCCAGTCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGGTGTTATGAAGGGCAATCAGTCAAATGTTCTACGTTTTCATCCTTGAATGAGCTTGATTCCAAGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGAGGAATGATAATTTGTCTGGGATCTCGTGCATCATAGTTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTCATAGGAGGGATGATATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAATCAGCTATCTGATTACTTTGATGGTTGTAGTATTTTTCGTGTGCTTGGGAGAAGTTTTCCAGTGGATATCAAATATGCTCCTCCTCACCATGCTGGGTATTCTGGTTCTTCTGTTGTCGCCTTGGATGTTATGGATGTTGTCAGAAAGGCAACAGAGGTTCACAGAACAGAGAAAAATGGAACTATCCTTGCCTTTTTGACCTCTCAGTCAGAAGTAGAATATGCTTGTGAGAAATTTAAAATAATACCCTCTGCAGTTGCCCTGCCCTTACATGGAAAACTTTCATCTGATGAGCAATCTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTGACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATATGATCCTGGCAGCGGGATGAATGTACTTAAGGTGTGCTGGATTAGTCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAACCTGGTGTGTGCTATAGGCTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTGGCTCTTAGAGTGAAGAATATTCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAACTCTATTGATATAGCAGTCAGGAATCTAATTCAGTTAGGAGCAATTGAGATGAAAAACGATGGTCTTGATCTAACAGCAGAGGGTTGGTTCCTTGCTAAATTGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTACAAACATCGTTTGGGTAGGGAAGGTCTTGTTCTGGCTGCTGTGATGGCCAATGCTTGTAGGATATTTTGCAGAGTTGGCAGTGAATTTGAAAAACAAAGATCCGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCGCTGTGTACAAGGAATGGGATGCTTTGCCTTGGGGAGAAAGGAAAGGATGGTGTTTCAAAAACAGCATCAATGCTAAGTCCATGAGGAGGTGCCAAGACACAATTTTGGAGTATGAAAGTTGCCTTGAGCGTGAACTTAAAATTGTTATTCCGAGTTATTGGCATTGGGACCCTTATACACCCTCTAGTTATGATAAGAACTTGAAGAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTAGGTTATGAAGTGGCACAAACTGGGCAACACGTTCAACTGCATCCTTCATGTTCATTGCTTGTTTTTGCTCAGAAACCAAATTGGGTGGTTTTTGGTGAGATTCTTTCAATCTCTAATCAATATTTGGTCTGCGTGAGCACATTTGACTTTCAATCATTATATGACCTTTGCCCAGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGCGGAAGTTGCAAATGAAGACACTGTGTGGTCTTGGCTGTATTGTTCTCAAGAAATTTTGTGGAAAAGCCAACTGTAATTTGTTGGCTCTTGTTTCACGTATAAGGAAAGCTTGTTCAGAGGACCGTATCTACATTGAAGTGAATGTTGACCAGAATGCAGTCTACTTATTTGCCTCTTCAAATAATATGGATACAGCCCTTGCGTTGGTTAATGGCGCTCTAGAATTTGAGAGAAAGTTGTTACGTGCCGAATGTATTGATAAGTTTTTGTATCATGGGTCTGGTCCTTCACCTATCGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTATTGAGGTATGTCATGCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGCATCTGTGCTGTGCACAAATCTGCAGGCAATATGAAGGATGAAGATAAGGAAAAGTGGGGCAGGATAACTTTTACGTCCCCTGAATTTGTCAAAAGAGCCACTGAACTAGATGGACACGAGTTTTGTGGCTCCTCCTTGAAAATTTTCCCTTCGCAGTTGGGAGGGGATAAAACATTTTCGTACACTGATGTTAAAGCAAAAATTTGTTGGCCTCGTAGGATTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATCATATATTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAACAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCGGTTGGAAACCCACCATGCAGTGTTTTGGAAGAGGCACTCTTGAAGGCAATTTACCCCTCTTTGCCCAAAAGAAACCCGCACATTAGTTCTTGCCGGGTTCAGGTGTTTGTACCTGGGCCTAAGGATGCCTTTATGACAGCTTTAATCAGTTTCGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGCATATTGAAGGAAAGGCGTTACCTGGATGTCTACCATGGCAAAAGATAAAGTGCCAGCGGTCGTTTCAAAGCTCCTTGATATTTCCAGCACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGTACTTGCAAGCTTCAAGAATTTAAGAGGTCTTGAGATCGAGGAGGACAGGACATTTAATGGTTCCCACCGAGTCAAGATAACTGCGAACGCCACAAGGACAGTGGCAGATGTCAGAAGACCTCTGGAAGAACTATTAAGAGGGAAAATCATTGAGCATGACAGTCTCACTCCTGCAGTTCTCCAGCTCATGATGTCCAAGGATGGCTTTAATCTTAAAAACTCATTGGAGCAGGAGACAGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAAACAAGGTTGCTTTGGCTCATGACAAGGTGATTCAATCCCTCCTTTCTCTACATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAAGTGATTAAGAACTTTGGACCGGATCTGCATGGACTGAAAGAAAGGGTACCTGGAGTAGATCTTAAGCTCAACATAAGACGCCATGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAAACCAGGGTAGAGGAAATAATTTTTGAGATTGCTCGTTCATGCCATCATTTGGTTGGGACGTTTGATAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATCCATTCCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGCACCTTCCCAATATGTTGTACTCACAAGGACTGTGGAGATCCCATCCTGCTTACAGATCTGAGATCTCTCTTATTTAGCGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCAGTCGTGGCTACGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAGTTCAAGGAAGATCCGGATTCATCTCTGATGGAGTGGCGCAGAGGCAAGGATGAAGTTAAGAGTTGCTTGGCGTGTGGGCATGTAATTGAGAAGGTGGATGGGTGCAACCATGTTGAGTGCAAGTGTGGAAAGCATGTGTGTTGGGTTTGCTTAGAGTTCTTCGGTGGTAGTGATGAATGTTATAGCCATTTGAGAAATGTGCACACGACTATAATATAA 5388 0.4408 MNRNQEESDIGVTNCKRTRRASDKTKTIHLAIDIKHPSLYFAFKQIRVFIFQFHLSISSHCFLMKKSFYPNSSPTSQATHPCLDFHPQWRPRSYPRAHAARVHRPPETYLKVKPYFKVELRLGLRPSSREDIETLIKDCKHKEQSFTFYPDDEVAAVLSYKNWEEACDAAVWFWETLLLEKHDYTPELDSNASVTDSLDGRLRVLFRSHVMKVMEGKEVKRWVEESERLSKEIERVSRLRRNRWHFSSTNRNVDPRRGLVDEKDQVERRLKEFDSAMDCILKHLAEGADMEGADVEVEDRRSVNVLKFDGRCDWKRIHCLIRRECRRLEDGLPIYAYRKDILREIHDQKMVVLIGETGSGKSTQLVQFLADSGIGADESIVCTQSRKIAAKSVAQRVQEESSGCYEGQSVKCSTFSSLNELDSKIIFTTDHCLLQHYMRNDNLSGISCIIVDEAHERSLNTDLLMTLLKNLLHRRDDMRLIIMSATADANQLSDYFDGCSIFRVLGRSFPVDIKYAPPHHAGYSGSSVVALDVMDVVRKATEVHRTEKNGTILAFLTSQSEVEYACEKFKIIPSAVALPLHGKLSSDEQSRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALRVKNIQDFDFVDAPSSNSIDIAVRNLIQLGAIEMKNDGLDLTAEGWFLAKLGIEPRLGKLILGCYKHRLGREGLVLAAVMANACRIFCRVGSEFEKQRSDCLKVQFCHCDGDLFTLLAVYKEWDALPWGERKGWCFKNSINAKSMRRCQDTILEYESCLERELKIVIPSYWHWDPYTPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPNWVVFGEILSISNQYLVCVSTFDFQSLYDLCPAPLFDVSKMVERKLQMKTLCGLGCIVLKKFCGKANCNLLALVSRIRKACSEDRIYIEVNVDQNAVYLFASSNNMDTALALVNGALEFERKLLRAECIDKFLYHGSGPSPIALFGSGAEIKHLELEKRSLSIEVCHANINAIDDKELLMFLEKNTSGSICAVHKSAGNMKDEDKEKWGRITFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSYTDVKAKICWPRRISRGFAIVKCDIKDVNHILRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEILDVLRTATNRRILDFFLVRGDAVGNPPCSVLEEALLKAIYPSLPKRNPHISSCRVQVFVPGPKDAFMTALISFDGRLHLEAAKALEHIEGKALPGCLPWQKIKCQRSFQSSLIFPAPVFRVIREQLDGVLASFKNLRGLEIEEDRTFNGSHRVKITANATRTVADVRRPLEELLRGKIIEHDSLTPAVLQLMMSKDGFNLKNSLEQETGTYILFDRHNLNLRVFGSPNKVALAHDKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQVIKNFGPDLHGLKERVPGVDLKLNIRRHVISLNGRKELKTRVEEIIFEIARSCHHLVGTFDNDGPNCPICLCEVEDPFQLEGCGHLFCRLCLVEQCESAIKNQGTFPICCTHKDCGDPILLTDLRSLLFSDKLEELFRASLGAVVATSGGTYRFCPSPDCPSIYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLMEWRRGKDEVKSCLACGHVIEKVDGCNHVECKCGKHVCWVCLEFFGGSDECYSHLRNVHTTII* 1796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1468 1795 CDD SF2_C_RHA 509 670 - -
Vra2g1468 1795 SUPERFAMILY RING/U-box 1582 1648 - -
Vra2g1468 1795 Gene3D - 317 507 IPR027417 -
Vra2g1468 1795 ProSiteProfiles Zinc finger RING-type profile. 1586 1628 IPR001841 -
Vra2g1468 1795 SMART ibrneu5 1719 1783 IPR002867 -
Vra2g1468 1795 SMART ibrneu5 1653 1718 IPR002867 -
Vra2g1468 1795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 702 IPR001650 -
Vra2g1468 1795 ProSitePatterns Zinc finger RING-type signature. 1602 1611 IPR017907 -
Vra2g1468 1795 PANTHER ATP-DEPENDENT RNA HELICASE 155 1546 - -
Vra2g1468 1795 PANTHER ATP-DEPENDENT RNA HELICASE 1617 1710 - -
Vra2g1468 1795 SMART helicmild6 563 662 IPR001650 -
Vra2g1468 1795 SUPERFAMILY RING/U-box 1669 1724 - -
Vra2g1468 1795 Gene3D - 706 811 - -
Vra2g1468 1795 Pfam Helicase conserved C-terminal domain 544 661 IPR001650 -
Vra2g1468 1795 Gene3D - 1696 1793 - -
Vra2g1468 1795 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 886 965 IPR011709 -
Vra2g1468 1795 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 447 456 IPR002464 -
Vra2g1468 1795 ProSiteProfiles TRIAD supradomain profile. 1582 1790 IPR044066 -
Vra2g1468 1795 SMART ultradead3 330 514 IPR014001 -
Vra2g1468 1795 Coils Coil 219 239 - -
Vra2g1468 1795 CDD DEXHc_RHA-like 351 504 - -
Vra2g1468 1795 Pfam IBR domain, a half RING-finger domain 1667 1718 IPR002867 -
Vra2g1468 1795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 826 IPR027417 -
Vra2g1468 1795 SMART ha2_5 722 818 IPR007502 GO:0004386
Vra2g1468 1795 Gene3D - 508 681 IPR027417 -
Vra2g1468 1795 ProSitePatterns Zinc finger C2H2 type domain signature. 1770 1791 IPR013087 -
Vra2g1468 1795 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1617 1710 - -
Vra2g1468 1795 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 155 1546 - -
Vra2g1468 1795 Pfam Helicase associated domain (HA2) 723 817 IPR007502 GO:0004386
Vra2g1468 1795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 505 IPR014001 -
Vra2g1468 1795 SUPERFAMILY RING/U-box 1740 1788 - -
Vra2g1468 1795 Pfam DEAD/DEAH box helicase 339 490 IPR011545 GO:0003676|GO:0005524
Vra2g1468 1795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1582 1662 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1468 Vra-Chr2 22658729 22666062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1468 1602 1787 ARIADNE family AT3G27710 29.630 1.96e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1468 K12818 - gmx:100810008 2770.34