Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1466 ATGAATAGGAGAATCCAAACCAGTTACAGTCCAATAGCTTCTCCTCTTCCCTCAGTAACTCCACGTTCATTTCCGTGGTTTTCACCACCCCTCCTTGATGGAGAACACGACCACCTAAACCTTGCATCCATCATTATAATCGGCCTAGGTAGCACAGCTTGTGTAATTATGTTTCTCATCACCTTGTCCAAAATCCTAAAGATCTATTATTTAAATAGATACAACGTTAGCAGAAGAAACCCTCCAATATTATTTGACGTTCGAGGAGATTCTCCTCCCTTTTCCGATGACGAGGAACAGGAGCATGTTATCAGGCAGCACTCCATACGGCTCAGCCCCACAGAGGGTCTCCAGCAATCAACCATAGACTCCATCACAGTTTACAGATACAGAAATAACGAAGTTTTGGTTAAAGAAACTGAGTGTCTTGTTTGCCTCGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCACCTCCCTTGCATTGATGCCTGGTTGAGGACACATAAAACCTGTCCCTTGTGCCGCACCCCTATTGTTCATGATGCTGTCAGTGCTGATGGTGAAACTGAGTCTGATTCAAGTCTTTCTGATATGATCCAGGACATGGAAGAATGCAATGGTAGTGGTGTTTTGAGGGTTGGTAATGAAGATTCTAGTGGTGATGGAATTGAAATTTTGTCTGAATTTGGTGAGGTGAATGGTGATTATTCAGCTCCAATTAGTCGTGCTTCTGATGCTGATACACAGACACAAGAATTTGATGATGAAAATGAACCCAAAATGAAGAGGTCTTTCTCAGTGGATTCATATGTTTTGTTTCTACAATATAAAAAGCTTAGACAGACGAAAATTGGTGATTGA 888 0.42 MNRRIQTSYSPIASPLPSVTPRSFPWFSPPLLDGEHDHLNLASIIIIGLGSTACVIMFLITLSKILKIYYLNRYNVSRRNPPILFDVRGDSPPFSDDEEQEHVIRQHSIRLSPTEGLQQSTIDSITVYRYRNNEVLVKETECLVCLGEFQQEESLRLLPKCSHAFHLPCIDAWLRTHKTCPLCRTPIVHDAVSADGETESDSSLSDMIQDMEECNGSGVLRVGNEDSSGDGIEILSEFGEVNGDYSAPISRASDADTQTQEFDDENEPKMKRSFSVDSYVLFLQYKKLRQTKIGD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1466 295 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vra2g1466 295 MobiDBLite consensus disorder prediction 246 269 - -
Vra2g1466 295 SUPERFAMILY RING/U-box 130 190 - -
Vra2g1466 295 SMART ring_2 142 183 IPR001841 -
Vra2g1466 295 PANTHER RING-H2 FINGER PROTEIN ATL54 21 279 - -
Vra2g1466 295 Pfam Ring finger domain 141 184 IPR001841 -
Vra2g1466 295 CDD RING-H2_PA-TM-RING 141 184 - -
Vra2g1466 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 192 IPR013083 -
Vra2g1466 295 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 279 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1466 Vra-Chr2 22654818 22655705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1466 39 194 C3H Transcription Factor Family AT1G72220 40.385 4.56e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1466 - - pvu:PHAVU_001G254300g 400.208