Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1463 ATGGAGATATGCGTGCACCATGTGCTCATTCTGGTGCTGTCTCTCTGCAGTTCCTTAGACTGTGTGAATGCTCAGTGGAATCCATTAAGCCCTGCCACCTACGAGGAGATGAACCGTAGTGACAACTTGAAGGCCTCACTCAGTCTCTCCTTCTCCTGTGTCTCCATTGGCTTCTTCTTGTTCCTTTTCTTCAAAATCCGCTCGCGTTTTTTCCCCCGCCCTCCTTACATCAAGCCCCTCCCGAAAACAACCGCCGAAGCCATCCAAAGATGTCCCACCTTCGATTTCTCCCAGATGAAGGACCTCAGCCTGGGGAATGGGGCAGAGGAGTGCGCGGTGTGTTTGGTGGAGTTCGAAGACTCCGATACCGTGAAGATGCTGCCGCTCTGCCAACATGTTTTCCACCAGAATTGCATCGATCAATGGCTACCCTCTCGCCTCACGTGCCCCATTTGTCGCCAGAAGCTTATATCTGACGACACTGAAGCAAGCATCACCGATGTCCCATCGGAACAAGAAGAAGAAGAAGAAAATGGTGACACTGCAGAGTTTACTGAGGTGGCCATAACTGCAGCAATGGAACAACATGAACATGAAACTGAAGCTGATAACGCTGTGGGATAG 624 0.508 MEICVHHVLILVLSLCSSLDCVNAQWNPLSPATYEEMNRSDNLKASLSLSFSCVSIGFFLFLFFKIRSRFFPRPPYIKPLPKTTAEAIQRCPTFDFSQMKDLSLGNGAEECAVCLVEFEDSDTVKMLPLCQHVFHQNCIDQWLPSRLTCPICRQKLISDDTEASITDVPSEQEEEEENGDTAEFTEVAITAAMEQHEHETEADNAVG* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1463 207 PANTHER RING FINGER DOMAIN-CONTAINING 86 168 - -
Vra2g1463 207 CDD RING-H2_PA-TM-RING 110 153 - -
Vra2g1463 207 MobiDBLite consensus disorder prediction 166 181 - -
Vra2g1463 207 Pfam Ring finger domain 110 153 IPR001841 -
Vra2g1463 207 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Vra2g1463 207 PANTHER RING-H2 FINGER PROTEIN ATL11 86 168 - -
Vra2g1463 207 MobiDBLite consensus disorder prediction 162 181 - -
Vra2g1463 207 SUPERFAMILY RING/U-box 97 159 - -
Vra2g1463 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
Vra2g1463 207 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1463 Vra-Chr2 22640501 22641124 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1463 85 157 Rapid Response to Elicitors AT2G35000 52.055 2.65e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1463 K10664 - gmx:100804862 192.2