Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g1459 | ATGGGTCTGTCAAATTTTCCAAGTGCATCAGAAGGGGTGCTTCCTGTGCTGGTGATAAACACGGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGGTCCAAGTTGTGGGAGGCAGTCGAAGTCCAAGTTCCGGTGGGAACAGCGAACAGGAATGTCATGAAAGTTCACGAGAAAGGAGGGTGTCGATAACTCAGTTCAAGGCATTGTCGAAGGACATAGGAAGAAGAAGCAGTGACAGTGGATGGAAGGGTGTGACCATGGTTGAGTGCTGCGTTTGCTTGTGTCGTTTTGAAGGCAATGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGCTGCTTGGACAAATGGTTTGATAACAAACACGCCTCATGCCCCTTGTGTCGTTCCATGGATTAG | 417 | 0.4796 | MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMVQVVGGSRSPSSGGNSEQECHESSRERRVSITQFKALSKDIGRRSSDSGWKGVTMVECCVCLCRFEGNEEVSELPCKHYFHRGCLDKWFDNKHASCPLCRSMD* | 139 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g1459 | 138 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 138 | IPR013083 | - | |
Vra2g1459 | 138 | SMART | ring_2 | 93 | 134 | IPR001841 | - | |
Vra2g1459 | 138 | Pfam | Ring finger domain | 92 | 135 | IPR001841 | - | |
Vra2g1459 | 138 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
Vra2g1459 | 138 | CDD | RING-H2_PA-TM-RING | 92 | 135 | - | - | |
Vra2g1459 | 138 | PANTHER | F21J9.24-RELATED | 1 | 137 | - | - | |
Vra2g1459 | 138 | ProSiteProfiles | Zinc finger RING-type profile. | 93 | 135 | IPR001841 | - | |
Vra2g1459 | 138 | SUPERFAMILY | RING/U-box | 92 | 136 | - | - | |
Vra2g1459 | 138 | PANTHER | - | 1 | 137 | IPR044249 | - | |
Vra2g1459 | 138 | SMART | ringv_2 | 92 | 135 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g1459 | Vra-Chr2 | 22620489 | 22621348 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g1459 | 1 | 136 | C3H Transcription Factor Family | AT2G04240 | 33.974 | 8.64e-22 | 83.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g1459 | K16285 | - | gmx:100811790 | 194.897 |