Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1459 ATGGGTCTGTCAAATTTTCCAAGTGCATCAGAAGGGGTGCTTCCTGTGCTGGTGATAAACACGGTTCTCTCAGTGGCTGTGTTGAAGAACATGTTTAGATCCATGGTCCAAGTTGTGGGAGGCAGTCGAAGTCCAAGTTCCGGTGGGAACAGCGAACAGGAATGTCATGAAAGTTCACGAGAAAGGAGGGTGTCGATAACTCAGTTCAAGGCATTGTCGAAGGACATAGGAAGAAGAAGCAGTGACAGTGGATGGAAGGGTGTGACCATGGTTGAGTGCTGCGTTTGCTTGTGTCGTTTTGAAGGCAATGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACAGAGGCTGCTTGGACAAATGGTTTGATAACAAACACGCCTCATGCCCCTTGTGTCGTTCCATGGATTAG 417 0.4796 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMVQVVGGSRSPSSGGNSEQECHESSRERRVSITQFKALSKDIGRRSSDSGWKGVTMVECCVCLCRFEGNEEVSELPCKHYFHRGCLDKWFDNKHASCPLCRSMD* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1459 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 138 IPR013083 -
Vra2g1459 138 SMART ring_2 93 134 IPR001841 -
Vra2g1459 138 Pfam Ring finger domain 92 135 IPR001841 -
Vra2g1459 138 MobiDBLite consensus disorder prediction 40 62 - -
Vra2g1459 138 CDD RING-H2_PA-TM-RING 92 135 - -
Vra2g1459 138 PANTHER F21J9.24-RELATED 1 137 - -
Vra2g1459 138 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Vra2g1459 138 SUPERFAMILY RING/U-box 92 136 - -
Vra2g1459 138 PANTHER - 1 137 IPR044249 -
Vra2g1459 138 SMART ringv_2 92 135 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1459 Vra-Chr2 22620489 22621348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1459 1 136 C3H Transcription Factor Family AT2G04240 33.974 8.64e-22 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1459 K16285 - gmx:100811790 194.897