Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1449 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAAGGAAGCTTAGACCCAAGAGCCGAAGAGTTCAGACCAAGCATGAACAACCCCATTATTCAATGCCAATGGTACCCTATTCCTCTCCCTCTACCCTTACCGTTACCTTTGCCCTTCCCACACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCTACCTCCTCCACCCGTTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTCCGCGCCGAACTCCAGGCTTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCTCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAGGTCGCCCCCGCCTCCCCAGGCCTCCTCTCCGCCCGCCCCATCTCTGCACACTACGTGCTCCCCTCCTCCTCCTCCATCCCCGACGCCCACAACCAAGGCACCCTCGTGGTCTTCAACTTAGACCCTCACCTCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTCGGTCCCATAAAGGAATTGAGAGATACACCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACCAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATCCACGGGAAACCCATCATTATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAATTCTTCCACCACTCTCCTTCCTCCAAAACTACTCCTCTCGATTTCAATGCCCAACCACCACCCTTCCCTCCTTCCCCGCCTCGTCGTTTTCCTGCTCCTCGCTTGCATACCTCTCACCCTCAATTCTCTCGCAATAAATCATTGCCAAGTCCCGTCAAGGTCCAAGATTCTGTCGATGAGCCAATTGGGTCAATCACTTTGACCGGGGATGTTGGAAATGGGGTTCAAGACCAGCACCACTCACATGCTGGTGGCCCCCCTAGGAGGAATCTTACCAGAAAGCAGAATTGCGAGACCACGCTAGTCGTAGCAACCACAAAGCAGCAGCACCAACAACAACACCCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAGGCAAAGAAACTCGAAGCTCGCTTTCTAATTAAAGAGGATGCCATTGTCGAATCTGGTCCCAAAGATACTCGAACCACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATTGCAGACGGCCATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATCGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCGACACTCAGACTCTACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTTAACTCAAGAAAAATCTGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTACACCACCTCGAGATGGCAGGGAACTCACCGAGCCACTTCCCTTAGTGGGGAACAGCACCAACAAGCAGCACCAACCACCCGTTTCAATTCCGAACTGCGATGATAATGGCGGTGATGACGTGGAAAGCAGCAAAAGCGGCGACGTAGGCGATGATGATGATGATGACGATGACACGAATGCAGAGGTTGGTGGTGGTGGAGGCCTAGAAGAAGACTCTGAAGGGTAG 1791 0.5338 MGETGIIVRLEGSLDPRAEEFRPSMNNPIIQCQWYPIPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQVAPASPGLLSARPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSPSSKTTPLDFNAQPPPFPPSPPRRFPAPRLHTSHPQFSRNKSLPSPVKVQDSVDEPIGSITLTGDVGNGVQDQHHSHAGGPPRRNLTRKQNCETTLVVATTKQQHQQQHPQQLPRSRHWKGKQAKKLEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGHEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFTPPRDGRELTEPLPLVGNSTNKQHQPPVSIPNCDDNGGDDVESSKSGDVGDDDDDDDDTNAEVGGGGGLEEDSEG* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1449 596 CDD RRM3_EAR1_like 395 496 IPR034458 -
Vra2g1449 596 MobiDBLite consensus disorder prediction 350 369 - -
Vra2g1449 596 PANTHER RNA BINDING PROTEIN 44 580 - -
Vra2g1449 596 MobiDBLite consensus disorder prediction 259 276 - -
Vra2g1449 596 SMART rrm1_1 165 233 IPR000504 GO:0003723
Vra2g1449 596 PANTHER TERMINAL EAR1-LIKE 1 44 580 - -
Vra2g1449 596 MobiDBLite consensus disorder prediction 567 582 - -
Vra2g1449 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Vra2g1449 596 SUPERFAMILY RNA-binding domain, RBD 165 474 IPR035979 GO:0003676
Vra2g1449 596 Pfam RNA recognition motif 2 395 505 IPR007201 -
Vra2g1449 596 MobiDBLite consensus disorder prediction 528 596 - -
Vra2g1449 596 Gene3D - 158 244 IPR012677 -
Vra2g1449 596 MobiDBLite consensus disorder prediction 281 295 - -
Vra2g1449 596 MobiDBLite consensus disorder prediction 247 297 - -
Vra2g1449 596 MobiDBLite consensus disorder prediction 535 551 - -
Vra2g1449 596 MobiDBLite consensus disorder prediction 315 338 - -
Vra2g1449 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Vra2g1449 596 Gene3D - 336 499 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1449 Vra-Chr2 22545396 22548780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1449 166 236 Eukaryotic Initiation Factors Gene Family AT2G23350 37.333 1.55e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1449 - - vra:106755897 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1449 2 22545396 22548780 Vra2g1449 2 22545396 22548780 ECH