Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1445 ATGTCTCAAATTTCCGTGAGCATTAATGGGTCAAGGAGAAAGTTGGGGTACCTTTCTTGTGGTACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAATCGTAAGCGTTTAGCTAGTTGTGGTATTGGGTTCGGCAAGAATGCCATTGGTGGAAGAGATGGGAAACTATACGTGGTGACTGACCCCAGTGATAACCCTATGAACCCTAAACCAGGTACGTTGAGACATGGTGTTATCCAAGAAGAGCCTTTGTGGATCATTTTCAAGCGTGACATGGTGATCAAGCTACACATGGATCTCCTTGTTAATTCTTACAAAACCATTGACGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAACAAGAGGAATATCATAATTCATGGCATACACATTCATCATTGCAAACGAGGTCGGAGTGGATATGTCACTGATTTTCCTAACCATCGCACTTGGAGTGCAAGATCGGACGGTGATGGGATCACAATCTCTGGTGGGAATCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTTATTGATGTTGTTCATGGTTCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGATGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTAGGAGGAAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTCGTGAACAACGATTACATACATTGGCAGCATTACGCAATAGGTGGAAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCGAATGATGAAGACCATAAAGAGGTGAGAGTTGCATTTTGCGAAGTTCTTCCATGA 927 0.4434 MSQISVSINGSRRKLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCGIGFGKNAIGGRDGKLYVVTDPSDNPMNPKPGTLRHGVIQEEPLWIIFKRDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKVHNKRNIIIHGIHIHHCKRGRSGYVTDFPNHRTWSARSDGDGITISGGNHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYIHWQHYAIGGSSSPTIFSQGNRFLAPNDEDHKEVRVAFCEVLP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1445 308 SMART amb_all 97 294 IPR002022 -
Vra2g1445 308 SUPERFAMILY Pectin lyase-like 6 298 IPR011050 -
Vra2g1445 308 Pfam Pectate lyase 108 288 IPR002022 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 46 63 IPR018082 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 69 94 IPR018082 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 105 121 IPR018082 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 169 190 IPR018082 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Vra2g1445 308 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Vra2g1445 308 PANTHER PECTATE LYASE 18-RELATED 3 303 IPR045032 GO:0030570
Vra2g1445 308 Gene3D - 23 305 IPR012334 -
Vra2g1445 308 PANTHER PECTATE LYASE 3 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1445 Vra-Chr2 22518675 22521643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1445 11 299 Polysaccharide Lyase AT5G63180 74.138 5.03e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1445 K01728 - gmx:100801136 577.4