Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1444 ATGGAAATTCTAATTCCGCTGTCATTTATGTTACTCTTTCTGCTGCTTGTACCTTCCTGCATTTGTTCTTCCCCACTTCAAGATCCTGAACTAGTGGTGGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTCTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCCAATTGGGAAAAGAATCGGAAGAATTTAGCAGAGTGTTCCATTGGGTTTGGTAAGCATGCAATTGGAGGGAGGGATGGTAAAATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTGAGATATGGTGTGATCCGAGAGGAACCACTGTGGATCATTTTCCAGCGTGACATGGTGATCAAGCTGAAGCAAGAGCTTATGATGAACTCTTTCAAGACCATAGATGGTAGAGGGGTAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGAGCAACATTATCATTCACGGGATTAACATCCATGACTGTAAACAAGGAGGGAATGCTTATGTGAGAGACTCCCCTACACACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGTGGGAGCCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGGCTGATTGATGCCATCCATGGATCCACTGCCATTACCATATCCAACAATTACTTGACCCACCACAACAAGGTCATGCTTTTGGGCCATAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTAGTACAGAGAATGCCAAGATGTAGGTATGGATATTTCCATGTGGTGAACAATGATTACACCCAATGGAAAATGTATGCCATAGGAGGGAGTGCTGCACCAACAATCAATAGCCAAGGGAATAGGTTTTTTGCTCCTAATGACCATACATTCAAAGAGGTGACAAAGAGGGAGAATGCAGCACAGAGCAAATGGAAGAATTGGAATTGGAGGTCAACGGGAGATTTGATGCTAAACGGTGCGTTTTTCACTGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCCAGTTTGGCAGCAAAACCATCTTCACTCGTCAGTTCTTTAACAGCATCAGCTGGATCACTTAGATGTAGAAAGGGTTCACGTTGCTGA 1212 0.4505 MEILIPLSFMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKNLAECSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIREEPLWIIFQRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFFAPNDHTFKEVTKRENAAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLAAKPSSLVSSLTASAGSLRCRKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vra2g1444 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vra2g1444 403 PANTHER PECTATE LYASE 18-RELATED 6 400 IPR045032 GO:0030570
Vra2g1444 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Vra2g1444 403 Gene3D - 55 396 IPR012334 -
Vra2g1444 403 Pfam Pectate lyase 137 320 IPR002022 -
Vra2g1444 403 PANTHER PECTATE LYASE 6 400 - -
Vra2g1444 403 SMART amb_all 129 326 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1444 Vra-Chr2 22514212 22516341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1444 7 403 Polysaccharide Lyase AT5G63180 75.990 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1444 K01728 - gmx:100782388 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1444 2 22514212 22516341 Vra2g1444 2 22514212 22516341 ECH
Vra2g1444 2 22514212 22516341 Vra5g0701 5 11346672 11349217 ECH
Vra2g1444 2 22514212 22516341 Vra7g1619 7 34649429 34651382 ECH