Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1439 ATGGAGGGGTTGGACAGGTTTCTTGTGGCAACAAGCACCATAGGCTTCATTTGTGTGTGCAAGGTGTTTGTCAAATTTCTCAAGTGGGTGTGGGTGATGTTCTTGAGGCCACCAAAGAACCTCAAAGAATATGGTTCTTGGGCTATAATCACTGGATCCACTGATGGAATTGGCAAGGCCATGGCTTTTGAATTGGCATCCAAGGGACTCAACCTTCTCTTGGTTGGTCGAAACCCTCCGAAACTTGAGACGACATTGAAGGAAATAAGAGAGAGACATGGTGTTGAGGTCAAGTTTGTGGTCATAGATATGCAGAAAGTTAGTGGAGAGGAAATCGCTAAGAGAATAGAGGAAGCAATAGATGGCTTGGATGTGGGTTTGCTTGTTAATAGTGCTGGTTTGGCTTACCCTTATGCAAGATTCTTCCATGAAGTTGATTTGGAGCTTATGGATGCTATTGTGAAAGTGAATGTGGAGGCAACAACTTGGATCACAAAGGCCGTGATTCCATCCATGCTCAAGAAGAAAAAGGGTGCTATAGTGAACATTGGTTCTGGTTCTTCTGTGGTGCTTCCTTCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGGATACCTAGCCATGTTCTCCAGATGCATCAGTTTGGAGTATAAGCATCAAGGAATTGATATCCAGTGTCAGGTTCCATTATATGTGTCAACCAAAATGACCAAAATGAAGAGATCAGCTTTTGTGCCAACACCAGAATTGTACAGCAAAACATGCACAAGGTGGATTGGGTATGAAAAACTGGTTGAGCCATACTTTCTTCATGCTGTGCAAGGTTTTCTCATAAGAGCAATTCCTCATGCACTCATGGATTCCTACATGTTACGATATTTTCTTTATTTTCGTGCAAAAGGACTCTCCAAGGACTCCAACAAGGCTAAAAAAACATCATTAGCTGCATCTGATTCCCAAGAACCAAACATCATTAATCAAGATTACAGTACAAATTACTGA 1005 0.4199 MEGLDRFLVATSTIGFICVCKVFVKFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNLLLVGRNPPKLETTLKEIRERHGVEVKFVVIDMQKVSGEEIAKRIEEAIDGLDVGLLVNSAGLAYPYARFFHEVDLELMDAIVKVNVEATTWITKAVIPSMLKKKKGAIVNIGSGSSVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLYVSTKMTKMKRSAFVPTPELYSKTCTRWIGYEKLVEPYFLHAVQGFLIRAIPHALMDSYMLRYFLYFRAKGLSKDSNKAKKTSLAASDSQEPNIINQDYSTNY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1439 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Vra2g1439 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Vra2g1439 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Vra2g1439 334 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Vra2g1439 334 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Vra2g1439 334 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Vra2g1439 334 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Vra2g1439 334 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vra2g1439 334 PANTHER RH59310P 5 309 - -
Vra2g1439 334 Pfam short chain dehydrogenase 47 242 IPR002347 -
Vra2g1439 334 Gene3D - 41 265 - -
Vra2g1439 334 PIRSF 11-beta-HSD1 2 305 - -
Vra2g1439 334 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Vra2g1439 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 299 IPR036291 -
Vra2g1439 334 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vra2g1439 334 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 5 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1439 Vra-Chr2 22483503 22485757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1439 14 309 Lipid Metabolism Gene Families AT1G67730 51.667 8.89e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1439 K10251 - gmx:100816067 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1439 2 22483503 22485757 Vra2g1439 2 22483503 22485757 ECH
Vra7g2145 7 41159098 41162368 Vra2g1439 2 22483503 22485757 PCT