Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1433 ATGTGGCAAAATCAGGCCAATCATTCTTCTTACAGTGGTTCTGTCAAGGCTCTTGAAGATGATATACAACATGCTAATTCCTTGGCATTGTCACTTCCTGGAGATTGTGATGGGAACTGTTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTGATTCAATGGTTGGATCTTAGTTGCACGGATACTTTACCTGTGTATTTGGGATTACTCCACATACTAATTTTCAATGTATACGCTGATGGAATACCATCTATTTCCTCAAATGAAAGGAAAGCAACTATAAAGGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGCTTCAAGGCGAGTTTAACAATGATCGAAGACACAGTTATGCAGAAGTGAACAGAAAGAGGCTTGAAAAGGTCCAAAGTAAAGATTTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAACAACATGAAGATGGTTCTGCCAAACTGTGGACATTCCTTCTGCATAAGTTGCTTCCATGATTGGTACATGAGATCAGAGTCATGTCCCTTTTGCCGTGGAAGCATGAGAAGGATCAGTCCTGCAGATTTATGGATGGTCATTGGCAACAGTGATGTGGTTGACAGCTTCACCATTGCAAAAGACAATTTGAGACGTTTGTACCTTTTCATTCAAACTCTGCCTCCAATCTTAGCAGAACCACATCTACTATACACATTCAATTACATGCTATGA 735 0.3946 MWQNQANHSSYSGSVKALEDDIQHANSLALSLPGDCDGNCFQMKLSYSPFAPLFLHLIQWLDLSCTDTLPVYLGLLHILIFNVYADGIPSISSNERKATIKEFYAVIYPSLRLLQGEFNNDRRHSYAEVNRKRLEKVQSKDLEGDEECGICMENNMKMVLPNCGHSFCISCFHDWYMRSESCPFCRGSMRRISPADLWMVIGNSDVVDSFTIAKDNLRRLYLFIQTLPPILAEPHLLYTFNYML* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1433 244 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 4 244 - -
Vra2g1433 244 PANTHER RING FINGER PROTEIN 41, 151 4 244 - -
Vra2g1433 244 SMART ring_2 148 185 IPR001841 -
Vra2g1433 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 195 IPR013083 -
Vra2g1433 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Vra2g1433 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Vra2g1433 244 SUPERFAMILY RING/U-box 133 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1433 Vra-Chr2 22445373 22447652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1433 114 197 C3H Transcription Factor Family AT5G01960 32.143 3.95e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1433 - - gmx:100805014 413.69