Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1408 ATGTGGATAATGGATATTCCCGAGGTTGAAGAAAATCTTTTTGCACCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTCTCTTTCGGCAATACACTGCAAGATATTGTTATTATTCCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGACAAAGAATGTTCTTCGACACTGCTCAGAGTCGAGTAAACTTTACTTGGCTATAACAGCAGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAATGGGGTGAAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTGCAAATACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGATTCTAATGACAGTAGTGAACTTGAATGCTTTCATCTAGCTGCTACTACTGTAGGAATCACTTCTTCAAGAGCGGCCCTTGCAGAAAGAAGATCTCTTAGAAAACTCATAGAAAGAGCTCGAGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCTAGTAATAGGGAATCAGGGCAGATGCTCGTTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGGCACAAGACCTGCCCAAAGACACAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTGAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGGTTGGCGTTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTATCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGGAAATGAGGGGGAATGCAGCAGAGGACCTTTCTGCACAAGAGGAAGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGAACAATTGGAAGAGGAAGTACAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGGGACGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATGCAGTTTCTGCAATCAGCCGTGCATGAAGGGAATGTGATGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATGATGATATCAGCAGGAATCTTGTCGCTGTTGGAGGAAATGATATCAAAAACTAGTTCCCATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGCACGAGTCAAGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATATTTCTACATTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGGAAGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCAGTTTTACAGAAAAATGCCTTGCTGTTTTGATAAATTTGGCTGTCTCTCCAGCAGGAAGAGAGCAAATGATTTTGGCTCCTGCACTCATAAGTGCCTTGGCGTCCACGCTGGATACTGGTAAGCTCACAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGCTGTGAGATGGTCTTGCAAGAAGGCGTTATCCCTGCGTTGGTGTCATTATCTGTAAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAAAAACTTTTGACGGTCTTCCGAGAGCAGCGTCAACGGGACCATTCACCTGTTGAGACAAATCAATGTGAACCTGAAAGTAGTGATTTCTCTATGCCTCCTCCTGAAACGAAACCGTTATGTAAATCAATATCCAGAAGAAAGGTGGTAGGGAAAGCTTTTAGATTTCTCTGGAAAAGCAAGAGCTATTCTGTTTATCAGTGTTAA 2310 0.4199 MWIMDIPEVEENLFAPSDAKLHGEMCKSLSAIHCKILLLFPSLEAARPRSKSGIQALCSLHVALEKTKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLNGVKDIVPQSIGCQIDEIVNELANTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSSELECFHLAATTVGITSSRAALAERRSLRKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGITGGHCHVFDRQLSKLSSFNFKPSNRESGQMLVLPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGIKVVPVEESGISEEMRGNAAEDLSAQEEEDHERYLSFLKVLSEGNNWKRKYKVVEQLRLLLRDDEEARIFMGANGFVDALMQFLQSAVHEGNVMALENGAMALFNLAVNNNRNKEMMISAGILSLLEEMISKTSSHGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHAKTEVQCKIDSLHALYNISTLSSNIPHLLSSGIIGSLQSLLVGQDDCSFTEKCLAVLINLAVSPAGREQMILAPALISALASTLDTGKLTEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSLSVNGTSRGREKAQKLLTVFREQRQRDHSPVETNQCEPESSDFSMPPPETKPLCKSISRRKVVGKAFRFLWKSKSYSVYQC* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1408 769 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vra2g1408 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Vra2g1408 769 Coils Coil 178 198 - -
Vra2g1408 769 CDD RING-Ubox_PUB 286 328 IPR045210 -
Vra2g1408 769 Gene3D - 403 723 IPR011989 -
Vra2g1408 769 SMART arm_5 458 502 IPR000225 GO:0005515
Vra2g1408 769 SMART arm_5 543 584 IPR000225 GO:0005515
Vra2g1408 769 SMART arm_5 504 542 IPR000225 GO:0005515
Vra2g1408 769 SMART arm_5 585 626 IPR000225 GO:0005515
Vra2g1408 769 SMART arm_5 627 668 IPR000225 GO:0005515
Vra2g1408 769 SMART arm_5 670 710 IPR000225 GO:0005515
Vra2g1408 769 SUPERFAMILY RING/U-box 273 357 - -
Vra2g1408 769 MobiDBLite consensus disorder prediction 712 737 - -
Vra2g1408 769 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Vra2g1408 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
Vra2g1408 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 753 - -
Vra2g1408 769 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Vra2g1408 769 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Vra2g1408 769 PANTHER U BOX DOMAIN-CONTAINING 4 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1408 Vra-Chr2 22260987 22265994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1408 4 769 U-box Gene Family AT1G27910 64.796 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1408 - - gmx:100804344 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1408 2 22260987 22265994 Vra7g0895 7 19809422 19814272 PCT