Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1399 ATGATTGCTATGGCGGAGGAAGAAGAGAACGGGGTGTCGATTCAACTCGAATTCCCGAAGAGTCGGGTTAAGAAGATCATGACGCTGGACAAGGATGTGAAGAGAGTGAGTTCAGAAGCATTGTTCCTGGTGTCGCGCTCCACAGAGTTGTTCCTCCAATTTCTGGCTGAAAAATCTGCCAAAGTTGCTATCGAAAAGAAACGGAAGACCGTGAATCTGGAACACGTGAGAATGGCCGTTAAGAGGCACCAACCAACCAGGGATTTTCTCCTCGATGATCTTCCGCCTCCGTCTGAGCCCGCCAAGCCCGCCAAGCCCGATGGGCCTGCCAAGCCCGTGGTTCGGCCCAAACTTGATGAACCGCCATCTGGTACTCGTCGCATCGATCAGTTTTTCCGAAAGCCAGAGCCTCAAAACCCAACCCAAGCTCAATCGCCTGAAAATCCAGCCCAAGCTCAGTCGTCTGAAATTCCTGCCCAAGCTCAAGCGCCCGAAATACCTTCTCAAGCTCAATCGCCTGAAGTTCCTTCAGAACCTCAATCGCCCGAAGTTCCTTCTGAAACTCAATCGCCTAGAGTTCCTTCTGAATCTCAATCGCCTGAAGCTCCTTCTCAAACTCAATTGCCATTACCCGTAGATGAGTCTTAG 648 0.5108 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDES* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1399 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Vra2g1399 215 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 6 136 - -
Vra2g1399 215 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 136 - -
Vra2g1399 215 MobiDBLite consensus disorder prediction 96 110 - -
Vra2g1399 215 Gene3D Histone, subunit A 2 95 IPR009072 GO:0046982
Vra2g1399 215 MobiDBLite consensus disorder prediction 135 215 - -
Vra2g1399 215 SUPERFAMILY Histone-fold 16 83 IPR009072 GO:0046982
Vra2g1399 215 MobiDBLite consensus disorder prediction 84 215 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1399 7 139 CCAAT-HAP5 Transcription Factor Family AT5G43250 60.150 1.77e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra2g1399 CBFD_NFYB_HMF 7.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1399 - - vun:114164970 298.13