Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1383 ATGCCACCTGGTTTGGAGTACAACATCGATGATCTGTTTCAAGAAGCTAAGAAACGATGGCTCAAGCCTGTCGAAGTGCTTTACATTTTACGGAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTATATCTGTTTAATAGAAGAGTCACGCGTTTCTTCCGCAAAGATGGTCATAACTGGCGGAAGAAAAGAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGGAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGGGAAATCCAACTCTGAGCCTTTCACACCATTGTCGTCAGGTTCCCCTCTTGCTTTTAGTCAGAGTCAAAGCCTGTATGCTGCTCACGACCCAGGGACATCATCCGTGTTTGGTGATTCATATGAACTTAATCACAATTTCTCTAGTCCCGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTACGCCAATTGGAAGAAGAGCTGAATATAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAATGATACGTCTACTACTTTGTCTGGACCAAATGATCAAGGGCATCTTTTTGTTAGATATAATGGAAGACAAGATAACAGTGACACATACTGTCATGACTTCCCTGATGATTATCCTGATGGAAATGAAAAAACTATATACTGGACCGAGGTGCTTAAAGCATGCAAGCCCTTGCCTGTGACCAATATACCAGATCAATATGGATATGAGGCATTTGAAAATGAACGGTCATTATTTTCTCCAGGAAGGGAAATGATTGCCAACATGGAAAACAATCAGTGGCCAAACTCCAACTGTAATAATGTTGAGAACTCTGTTTTTGCACTTCCTCAAGGCGACAGTGGAGTCAAATTTCCTCCATGTTCTCTGGTAGAAAATCCAGTAACTACCTTTGACTACTGTGAAATAGTTTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGAACAGAAACAGAAATTTACAATTAGAACAGTCTCCCCAGAATACTGCTATGCCACTGAGACCACAAAGGTTGTCATCATTGGATCATTTCTCTATCCTCACCCGGGTTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTAAGATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCTTGGAGAGGTTAAGTTGTGCATCACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGATGGTAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCAGAGATGCTCCACTCTTCTTCATCTAAAAAGGATGACAGCACAGAATCTGGAAGTCGCCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATCCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAATCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTTCATTGGGCTGCAAAATTTGGGAGGGAAAAAATGGTTGCATCACTTATAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCGAGTAAGATTTCGGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCGGCAGTGTCTCTGAAGAAAATATCGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAAGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCAGCTGCTGCTGCAGCAGCATGTCTAGATGGATATTGTATTGATCCAGGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAGTGGACTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGTGTTCCGTAAAGAGAAAGTAAATGGAGCAATTGAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCGGAAGAGGATCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2865 0.4353 MPPGLEYNIDDLFQEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLEPEYEHIVLVHYRETSKGKSNSEPFTPLSSGSPLAFSQSQSLYAAHDPGTSSVFGDSYELNHNFSSPGSLEVTSEAQALRQLEEELNINEDSFNERVIYNDTSTTLSGPNDQGHLFVRYNGRQDNSDTYCHDFPDDYPDGNEKTIYWTEVLKACKPLPVTNIPDQYGYEAFENERSLFSPGREMIANMENNQWPNSNCNNVENSVFALPQGDSGVKFPPCSLVENPVTTFDYCEIVFDQTQIQEPLGVDSSLTVEQKQKFTIRTVSPEYCYATETTKVVIIGSFLYPHPGSTWACMFGDVEVPAKIIQDGVISCETPSNLLGEVKLCITSGNRVPCSEVIEFEFRNKTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSSSKKDDSTESGSRLSTEQKDGDDSWSHMIDTLLVGSGKSSDTVNWLLEELLKDKLQLWLSNRSYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGSSELEAELTVGSVSEENIVASEDQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAAAAAAACLDGYCIDPGCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEVDSNEEESDDEDFLNVFRKEKVNGAIEMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1383 954 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Vra2g1383 954 ProSiteProfiles IQ motif profile. 788 817 IPR000048 GO:0005515
Vra2g1383 954 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vra2g1383 954 SMART iq_5 722 744 IPR000048 GO:0005515
Vra2g1383 954 SMART iq_5 787 809 IPR000048 GO:0005515
Vra2g1383 954 SMART iq_5 810 832 IPR000048 GO:0005515
Vra2g1383 954 ProSiteProfiles IQ motif profile. 723 752 IPR000048 GO:0005515
Vra2g1383 954 Pfam Ankyrin repeats (3 copies) 589 665 IPR002110 GO:0005515
Vra2g1383 954 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 950 - -
Vra2g1383 954 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515
Vra2g1383 954 Pfam IQ calmodulin-binding motif 791 808 IPR000048 GO:0005515
Vra2g1383 954 Gene3D - 552 674 IPR036770 -
Vra2g1383 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 839 IPR027417 -
Vra2g1383 954 SUPERFAMILY Ankyrin repeat 576 667 IPR036770 -
Vra2g1383 954 SMART ANK_2a 605 634 IPR002110 GO:0005515
Vra2g1383 954 SMART ANK_2a 644 673 IPR002110 GO:0005515
Vra2g1383 954 Coils Coil 900 920 - -
Vra2g1383 954 ProSiteProfiles Ankyrin repeat region circular profile. 605 634 - -
Vra2g1383 954 ProSiteProfiles IQ motif profile. 811 835 IPR000048 GO:0005515
Vra2g1383 954 MobiDBLite consensus disorder prediction 495 518 - -
Vra2g1383 954 Gene3D Immunoglobulins 369 464 IPR013783 -
Vra2g1383 954 MobiDBLite consensus disorder prediction 918 943 - -
Vra2g1383 954 PANTHER CALMODULIN-BINDING PROTEIN 1 950 - -
Vra2g1383 954 Gene3D - 788 835 - -
Vra2g1383 954 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vra2g1383 954 SUPERFAMILY E set domains 375 459 IPR014756 -
Vra2g1383 954 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1383 Vra-Chr2 22105983 22116180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1383 5 949 CAMTA Transcription Factor Family AT1G67310 47.562 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra2g1383 CG-1 8.9e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1383 K21596 - gmx:100791430 1410.2