Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1348 ATGGTGGTCTTATCTTCCTTTTGGTGTTCTGCACAATCAGTGATGGCCAGTGTGGCTATCATTATTGTGCTATTCCAGCAAACTCACGGTGCCCAGGATCGTCCATTGTGTGCTCCTTCTTCGTGTGGAAAAATTCGCAACATATCTTACCCTTTCCGACTCAAAGGCGATTCACCTGGTTGCGGCCTCCCAAGGTTCGAATTAGATTGCGTAAAGAATATGACAGTGTTCACCTTGTTTTCAGGGAGATACCATGTGCAGAATATCGATTACGAGACATTCAAGATCCAATTCACTGATGCAGGTGTTGTGGACGACACTGCTTGCTCCATTCCTCGCTATTTCATCTTTTCACAGAACTTCACTTCCATTGCGTTTCTAAACTGTACTGATCCAGTAACCGATGATCCTCGATATGTGGAAGTGAATGGCATGCTATGTGATTCTAGAGGCCATGTCTATGCTGTTCTTCATTCCAGTGAATTCAAAATGAGGGACATCAAGGTTGGGTGCCATTTAATAGCTGCTACCTTTGCAAACTGGAACAATGGCACCAACGTTTCGTATGTTGATATCCACGAGTGGCTGCATAATGGGTTTTGGATGTCTTGGGCACTAGTTAAATGTATAGACCAATGTGGAAAGGGTGTGGGATGCTTCATCAATCAAACTACAAATCAAATCGGATGTTCTCAGTACTATTGCCATGTTATGCAGTTTGACTTTGGAAAAGGAAAGTGCGGCATTCAGCACCAGATTTTTGGATACGTAGCTGTAATTCCTATCTATATAGCACGTTATTTTGATTTCGCCATAATGGTGGACGGAGATCTCATTTTGGTAGCCCCTATTCTAATATTTGTGGCAGCCAGGTTTCTATTTGGACTCGCACTTTTGCTTGCACTATTTATCCATACGTGGCGACGTAGGCATTACTCAATGTATGAAAACATTGAAACGTTTTTGCTACAGAATAATCTAAATCCTATTAGGTACGGATATAGAGAAATTAAGAAAATGAGCAGAGATTTCAAAGTTAAATTGGGTGAAGGAGGTTTTGGATCTGTATACAAAGGAAAACTTCAAAGTGGGCCAGAAATAGCCATAAAGATGTTGAAAAAAACGAAAGCAGATGGAGAAGAGTTCATTAATGAAGTGGCTAGTATTGGAAGAATACATCATGTAAATGTGGTACATCTTATTGGATATTGTGCTGAAGGAGAAAACCGTGCTCTGGTTTATGAATACATGACAAATGGTTCGTTGGATAAACACATCTTCTCCAAAAAGGAAAGTGTCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGTTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCAGAATATTCTTCTAGACGATAACTTCATTCCAAAGGTTTCAGACTTCGGACTTGCAAAGTTGTATCCTGTCAAAGATACGTCTATTGCTTTGACTAAAGCTAGAGGAACATTGGGTTACATGGCTCCAGAATTATTCTACAATAACATAGGTGGAGTATCAAATAAGGCTGATGTCTATAGTTTTGGGATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCCAACAGTACTTTCCCTTTTGGGTATATGATCAAATTAAAGATGAAAAAGATACTGAAATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCACTTTGGTGTATACAATTGAATCCAAATGACCGTCCTTCAATGAAGAGAGTCGTGGATATGTTGGAAGAAAGAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCTCATGAAACAATTGAACATGATCGCGGAGACAACTCAAACCAAGCATCATGGAGTGGTTCAACCAGTTCTAGCAATAATCTTGGCAAAACTAACACTAATCATCCATGGGAGAGTAATGCTTAA 2010 0.394 MVVLSSFWCSAQSVMASVAIIIVLFQQTHGAQDRPLCAPSSCGKIRNISYPFRLKGDSPGCGLPRFELDCVKNMTVFTLFSGRYHVQNIDYETFKIQFTDAGVVDDTACSIPRYFIFSQNFTSIAFLNCTDPVTDDPRYVEVNGMLCDSRGHVYAVLHSSEFKMRDIKVGCHLIAATFANWNNGTNVSYVDIHEWLHNGFWMSWALVKCIDQCGKGVGCFINQTTNQIGCSQYYCHVMQFDFGKGKCGIQHQIFGYVAVIPIYIARYFDFAIMVDGDLILVAPILIFVAARFLFGLALLLALFIHTWRRRHYSMYENIETFLLQNNLNPIRYGYREIKKMSRDFKVKLGEGGFGSVYKGKLQSGPEIAIKMLKKTKADGEEFINEVASIGRIHHVNVVHLIGYCAEGENRALVYEYMTNGSLDKHIFSKKESVPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPQNILLDDNFIPKVSDFGLAKLYPVKDTSIALTKARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQQYFPFWVYDQIKDEKDTEIEDASEEDKILVKKMYVVALWCIQLNPNDRPSMKRVVDMLEERVESLEMPPKPVYYPHETIEHDRGDNSNQASWSGSTSSSNNLGKTNTNHPWESNA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1348 669 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vra2g1348 669 Pfam Protein kinase domain 345 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1348 669 SUPERFAMILY Protein kinase-like (PK-like) 329 613 IPR011009 -
Vra2g1348 669 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 4 644 - -
Vra2g1348 669 MobiDBLite consensus disorder prediction 623 669 - -
Vra2g1348 669 MobiDBLite consensus disorder prediction 639 669 - -
Vra2g1348 669 Pfam Wall-associated receptor kinase galacturonan-binding 37 98 IPR025287 GO:0030247
Vra2g1348 669 Gene3D Phosphorylase Kinase; domain 1 319 416 - -
Vra2g1348 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vra2g1348 669 ProSiteProfiles Protein kinase domain profile. 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1348 669 Gene3D Transferase(Phosphotransferase) domain 1 417 622 - -
Vra2g1348 669 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1348 669 CDD STKc_IRAK 348 614 - -
Vra2g1348 669 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 644 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1348 Vra-Chr2 21475955 21479168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1348 37 633 Receptor kinase-like Gene Family AT5G38260 35.266 6.77e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra2g1348 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1348 - - pvu:PHAVU_011G197500g 1020.38