Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1345 ATGGTGTTCTTATCTTCCTTTTGGTGTTCTGCACAATCAGTGATGGCCTGTGTGGTTATCATTATTGTGCTATTCCAGCAAACTCACGGTGCCCAGGATCGTCGTCCATTGTGTGCTCCTTCTTCATGTGGAAAAATTCGCAACATATCTTACCCTTTCCGACTCAAAGGCGATTCACCTGGTTGCGGCCTCCCAAGGTACGAATTAGATTGCGTAAAGAATGTGACAGTGTTCACCTTGTTTTCAGGGAAATACCATGTGCAGAATATCGATTACGAGACATTCAAGATCCAATTGACTGATGCAGGTGTTGTGGAGGACACTGCTTGCTCCATTCCTCGCTATTTCATCTTTTCGCAGAACTTCGCTTACATTGGTGGTGCTAACAATTACGCGACTGATCCACTAACTTTCTGGAATGGGAATGGGGTTTCTGATACTCCTCCGTCTATAGCGTTCCTAAACTGTACTGATCCAGTAACCGATGATCCTCGATATGTGGAAGTGAATGGCATGCTATGTGATTCTAGAGGCCATGTCTATGCTGTTCTTCATTCCAGTGAATTCAAAATGAGGGACATCAAGGTTGGGTGCCATTTAATAGCTGCTACCTTTGCAAACTGGAACAATGGCACCAACGTTTCGTATGTTGATATCCACGAGTGGCTGCATAATGGGTTTTGGATGTCTTGGGCACTAGTTAAATGTATAGACCAATGTGGAAAGGGTGTGGGATGCTTCATCAATCAAACTACAAATCAAATCGGATGTTATCAGGACTATTGCCATGTTATGCAGTTTGACTTTGGAAAAGGAAAGTGCGGCATTCAGCANCAGATTTTTGGATACGTAGCTGNAATTCCTATCTATATAGCACGTTATTTTGTATTCGCCATAATGGGACTAATCTACAGAATAACACGTTTACATTACTTTTCGAAATGGCAAGTGGATGGAGATCTCATTTTGGTAGCCCCTATTCTAATATTTGTGGCAGCCAGGTTTCTATTTGGATTCGCACTTTTGCTTGCAATATTTATATATACGTGGCGACGTAGGCATTACTCAATGTATGAAAACATTGAAACGTTTTTGCTACACAATAATCTAAATCCTATTAGGTACGGATATAGAGAAATTAAGAAAATGAGCAGAGATTTCAAATTTAAATTGGGTGAAGGAGGTTTTGGATCTGTATACAAAGGAAAACTTCAAAGTGGGCCAGAAATAGCCATAAAGATGTTGAAAAAAACGAAAGCTGATGGAGAAGAGTTCATTAATGAAGTGGCNAGTATTGGAAGAATACATCATGTAAATGTGGTACATCTTATTGGATATTGTGCTGAAGGAGAAAACCGTGCTCTGGTTTATGAATACATGACAAATGGTTCGTTGGATAAACACATCTTCTCCAAAAAGGAAAGTGTCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGTTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCANAATATTCTTCTAGANGATAACTTCATTCCAAAGGTNTCAGANTTCGGACTTGCAAAGTTGTATCCTGTCAAAGATACGTCTATTGCTTTAACTAAAGCTAGAGGAACTTTGGGTTACATGGCTCCAGAATTATTCTACAATAANATAGGTGGAGTATCAAATAAGGCTGATGTCTATAGTTTTGGGATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGACCATTCAAGCCAACAGTACTTCCCCTTTTGGATATATGATCAAATTAAAGATGAAAAAGATACTGAAATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCGCTTTGGTGTATACAATTGAATCCAAATGACCGTCCTTCAATGAAGAGAGTCGTGGATATGTTGGAAGAAAGAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCCCATGAAACAATTGAACATGATCACGGAGACAACTCAAACCAAGCATCATGGAGTAGTTCAACCAGTTCTAGCAAAAATCTTGGCAAAACTAACACTAATCATCCATGGGAGAGCAATGCTTAA 2139 0.3904 MVFLSSFWCSAQSVMACVVIIIVLFQQTHGAQDRRPLCAPSSCGKIRNISYPFRLKGDSPGCGLPRYELDCVKNVTVFTLFSGKYHVQNIDYETFKIQLTDAGVVEDTACSIPRYFIFSQNFAYIGGANNYATDPLTFWNGNGVSDTPPSIAFLNCTDPVTDDPRYVEVNGMLCDSRGHVYAVLHSSEFKMRDIKVGCHLIAATFANWNNGTNVSYVDIHEWLHNGFWMSWALVKCIDQCGKGVGCFINQTTNQIGCYQDYCHVMQFDFGKGKCGIQXQIFGYVAXIPIYIARYFVFAIMGLIYRITRLHYFSKWQVDGDLILVAPILIFVAARFLFGFALLLAIFIYTWRRRHYSMYENIETFLLHNNLNPIRYGYREIKKMSRDFKFKLGEGGFGSVYKGKLQSGPEIAIKMLKKTKADGEEFINEVASIGRIHHVNVVHLIGYCAEGENRALVYEYMTNGSLDKHIFSKKESVPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPXNILLXDNFIPKVSXFGLAKLYPVKDTSIALTKARGTLGYMAPELFYNXIGGVSNKADVYSFGMLLMEMGSRRRNSNPHADHSSQQYFPFWIYDQIKDEKDTEIEDASEEDKILVKKMYVVALWCIQLNPNDRPSMKRVVDMLEERVESLEMPPKPVYYPHETIEHDHGDNSNQASWSSSTSSSKNLGKTNTNHPWESNA* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1345 712 SUPERFAMILY Protein kinase-like (PK-like) 372 656 IPR011009 -
Vra2g1345 712 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 687 IPR045874 GO:0004672
Vra2g1345 712 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Vra2g1345 712 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Vra2g1345 712 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 687 - -
Vra2g1345 712 Pfam Protein kinase domain 390 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1345 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Vra2g1345 712 Gene3D Transferase(Phosphotransferase) domain 1 460 665 - -
Vra2g1345 712 Gene3D Phosphorylase Kinase; domain 1 362 459 - -
Vra2g1345 712 MobiDBLite consensus disorder prediction 666 712 - -
Vra2g1345 712 ProSiteProfiles Protein kinase domain profile. 385 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1345 712 SMART serkin_6 385 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1345 712 MobiDBLite consensus disorder prediction 682 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1345 Vra-Chr2 21455377 21458865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1345 37 678 Receptor kinase-like Gene Family AT1G66910 34.880 3.44e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra2g1345 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1345 - - pvu:PHAVU_011G198500g 1035.02