Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1336 ATGACTTGCTTCCCATTCTCATTTGGTAGGAAAGTGCCCTCTGTGGCAAGACACAATCCAGATATTGATGAAGAACTCTCAGGCATTCAAAATGTGAGAATCTTTACCTACAAAGAACTAAGAGTTGCATCTGACAATTTCAGTCAGGCCAATAAAATTGGGCAGGGTGGCTTTGGTTCTGTTTATAAGGGATTACTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGATGTTGTGTGGAAGGGAACAACCGAATACTAGTCTACAATTATCTTGAGAACAATAGCCTTTCACAAACCCTTTTAGGTTCAGGTCACAGTAGTAACATCTTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACGCGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTCACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACTGTTACCGATAGGAGAGCAGTTTATTTTAGAAACGACATGGGAGCTTTATCAGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGAAGGGCATTTTGATGCCGAGGAGGCATGTAAATTTCTGAAAGTTGGACTTCTCTGCACTCAGGACACGTCGAAACTCCGGCCACCAATGTCTTCTGTGGTGAAGATGCTCACTGGAGAAATGGACATAGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGATCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCCTACAATGCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGTCATTTGCTGCAAGTACAAGTACAACCACAACCTTCACTCGTAAATATGATCAAAGCTTGTAA 1185 0.4059 MTCFPFSFGRKVPSVARHNPDIDEELSGIQNVRIFTYKELRVASDNFSQANKIGQGGFGSVYKGLLKDGKLAAIKVLSAESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLSQTLLGSGHSSNIFFDWKTRSRICIGIARGLSYLHEEVRPHIVHRDIKASNILLDKNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTLLPIGEQFILETTWELYQRRELVALVDASLEGHFDAEEACKFLKVGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSYNASSASDSQGNTMSFAASTSTTTTFTRKYDQSL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1336 394 SMART serkin_6 47 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1336 394 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vra2g1336 394 Pfam Protein kinase domain 48 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1336 394 CDD STKc_IRAK 53 321 - -
Vra2g1336 394 PANTHER - 2 373 - -
Vra2g1336 394 MobiDBLite consensus disorder prediction 350 394 - -
Vra2g1336 394 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Vra2g1336 394 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1336 394 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 373 - -
Vra2g1336 394 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Vra2g1336 394 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
Vra2g1336 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vra2g1336 394 MobiDBLite consensus disorder prediction 356 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1336 Vra-Chr2 21293722 21297968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1336 17 327 Receptor kinase-like Gene Family AT1G07650 55.128 9.25e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1336 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1336 - - gmx:100800503 671.003