Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1335 ATGGCTCTCTCTATCAGACCGTCTCCGAGAGTGCAGCCTGAACGAAGAGATTTCATCAGCTACTTCGATTCTCTCTTGGCCAGGTTGGCGTTGTGCAGCCTCTGCTCACGTGACGAACGCGACTACATTGACGAGGTGATACCGGACTTCGAGGTAATCGATGTGGTGGCGCATGGTGGCTACGGCCGAGTCTACCGGTGCCTCGAGCCTGTCTCCTACAATGTCGTCGCCGTGAAACAGATCACAATACTCGGCTCGTTCCAGGGTGTACCGGCTCAGATCATCCGCGAAGTGGCGTTCCTCAAAGAACTCCGCCATAACAACATTGTGAAGTTGCTTAATGTCTATGTCAGGGGAGACAGATATGTCAATCTTGTCTTCGAGCATCTCCAGTGCGACCTTCATGACTATATTAGGAAAAGCCGTTATAGCAATTCCAGGATTGTAAAGACTTTCATGCACCAGATACTCTCTGCTCTGGAATTCTGCCATACGCGTAAGGTTCTACATAGAGATTTGAAACCCAGCAATGTGCTGGTTGATGAACCTAATTTGCGGATCAAACTTGCGGATTTTGGTTTGGCTAGAGAGTTTAGAGATGACATATCATATACTGAGCAGGTAGGAACTGCCTGGTACAGGGCACCTGAAGTGTTGTTCGACAACTATCAATATTCATCTCCAATTGATTTGTGGGGTGCTGGCTGTGTATTTGCTGAGATGCTAACTGGAGGACCTCTATTCCATACTAGTAGGAAACGGGATGAGTTGCAGTCAATTTTCAGACTGTTAGGTACTCCCACAGAGGATACATGGCCAGGAATCACTCAATCATTGCCTGACATTCATAAGTACAAGAAATATAACCCAGTGGGCATGGACGAACTGTTTCCTAATCTGGAACAAAGTGGCCAGAATCTTCTAGCAAGATTGCTTTGCATGAACCCAAATGACAGGATTTCTGCTGCAGCCGCTCTAAGCCATGCTTACTTTAGGGATGCTCAGTGGGATGGAAAGCCAAAGGAGCAGTCGTCGAGTTGCATTCCTTTTAGATGA 1056 0.4725 MALSIRPSPRVQPERRDFISYFDSLLARLALCSLCSRDERDYIDEVIPDFEVIDVVAHGGYGRVYRCLEPVSYNVVAVKQITILGSFQGVPAQIIREVAFLKELRHNNIVKLLNVYVRGDRYVNLVFEHLQCDLHDYIRKSRYSNSRIVKTFMHQILSALEFCHTRKVLHRDLKPSNVLVDEPNLRIKLADFGLAREFRDDISYTEQVGTAWYRAPEVLFDNYQYSSPIDLWGAGCVFAEMLTGGPLFHTSRKRDELQSIFRLLGTPTEDTWPGITQSLPDIHKYKKYNPVGMDELFPNLEQSGQNLLARLLCMNPNDRISAAAALSHAYFRDAQWDGKPKEQSSSCIPFR* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1335 351 SUPERFAMILY Protein kinase-like (PK-like) 45 335 IPR011009 -
Vra2g1335 351 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Vra2g1335 351 ProSiteProfiles Protein kinase domain profile. 50 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1335 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vra2g1335 351 PANTHER CYCLIN-DEPENDENT KINASE 29 337 - -
Vra2g1335 351 Pfam Protein kinase domain 51 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1335 351 Gene3D Transferase(Phosphotransferase) domain 1 131 348 - -
Vra2g1335 351 PANTHER CELL DIVISION PROTEIN KINASE 29 337 - -
Vra2g1335 351 SMART serkin_6 50 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1335 Vra-Chr2 21287087 21289906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1335 50 333 Core Cell Cycle Gene Families AT3G48750 43.403 5.76e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vra2g1335 Pkinase 7.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1335 K02206 - gmx:100799974 371.703