Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1330 ATGGACAGCACCGAAGACTCATCAACGAGTTCACAACAACAACAACAACAACCAAACCTCCCACCCGGGTTTCGGTTCCACCCCACAGACGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAAGTTGATTCTATTCCTCTCCCTGTTTCCATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGTCCAAGAGATAGGAAGTACCCAAATGGCGCGAGGCCAAACAGGGCTGCAACTTCAGGGTACTGGAAAGCCACGGGGACAGATAAACCCATATGCAGTGGAACTCAAAAGGTTGGGGTGAAGAAATCTTTGGTTTTCTACGGAGGAAAGCCACCAAAAGGGGTGAAAACCGATTGGATCATGCATGAATATCGTCTCGTTGAAACCAAGCCTAACAACAGACCACCTGGTTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAACACACAAAGGTCAGGTATGGAGCAGGAGAGGGATGATTCCATGGATGAGATGATTGGAGAAGTACCTTCTTCCATGAACGTGGGCCACATGAATGCGAGATTTCATCTTTCAAAGATGTGTACGAGCTACAGTAGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGAAATGGTGTGAATGGGATGAGCACTACTACTACTACTACTACTACTACAAGTGCCAAGCCAGATCACCTTCCTTTTGCCCTTTCAAACAACACTTCAGCCTCCAAAAGAACACTCTCAACACTCTATAACTGGAACGATGAAAGTGATGAAAAACACTTCAATTTTGACAGTAATGGGAATGTGAGTGTTATGAGGACTGAAGAGAACAATGCTTCTCCTGGCTCCTTTGCTACTCTGCTTAACCAGCTCCCACAAACACCTTCATTGCCTCAAATAGGGTCTATGGGAGATGGGTTACTTAGGACACAATACCAACTACAAGGGACTAATTGGTAG 1062 0.4576 MDSTEDSSTSSQQQQQQPNLPPGFRFHPTDEELVVHYLKKKVDSIPLPVSIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLVETKPNNRPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSGMEQERDDSMDEMIGEVPSSMNVGHMNARFHLSKMCTSYSSALLENDRNTLEGVVIGNGVNGMSTTTTTTTTTSAKPDHLPFALSNNTSASKRTLSTLYNWNDESDEKHFNFDSNGNVSVMRTEENNASPGSFATLLNQLPQTPSLPQIGSMGDGLLRTQYQLQGTNW* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1330 353 ProSiteProfiles NAC domain profile. 20 179 IPR003441 GO:0003677|GO:0006355
Vra2g1330 353 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g1330 353 PANTHER NAC TRANSCRIPTION FACTOR 56 1 332 - -
Vra2g1330 353 SUPERFAMILY NAC domain 13 179 IPR036093 GO:0003677|GO:0006355
Vra2g1330 353 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g1330 353 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 332 - -
Vra2g1330 353 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vra2g1330 353 Gene3D NAC domain 29 184 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1330 Vra-Chr2 21194978 21197044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1330 24 353 NAC Transcription Factor Family AT3G15510 51.549 1.21e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g1330 NAM 8.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1330 - - gmx:100812933 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1330 2 21194978 21197044 Vra2g1330 2 21194978 21197044 ECH