Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1288 ATGGCGACGAGAGCAGCAGTGGCGGCGCCACGCGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCATTCCTACGCCGCCTACGGGCGCTGTCCCCACTCCCGCACGACCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGTGAAGTCGTTCATGCAAGGGTGGTAGCTGATCGAGTCTCAGGCTACTCTAAGGGGTTTGGTTTTGTGCAATATGCAACAATAGAAGAGGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCTAGACCAAGACCACCTCCAGGACATCAAAATAACAACAGTCCTCCGTTTGGCCGGCAGTGA 435 0.5103 MATRAAVAAPRVLRRFFCSNSASSTFPFIPTPPTGAVPTPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVHARVVADRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGHQNNNSPPFGRQ* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1288 144 Gene3D - 31 137 IPR012677 -
Vra2g1288 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Vra2g1288 144 SUPERFAMILY RNA-binding domain, RBD 40 141 IPR035979 GO:0003676
Vra2g1288 144 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 139 - -
Vra2g1288 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vra2g1288 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vra2g1288 144 PANTHER TRANSFORMER-2-RELATED 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1288 Vra-Chr2 19666118 19669551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1288 48 129 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 4.85e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1288 - - gmx:100789351 238.424