Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1284 ATGGGTTCAGATAGATCAAGATCTGTGAGATTTCAAGATGAACTTGAGACAAATACGTTAATGGACAACAAAGAAAAACACTTGTCATTGGTGGCCTGTGATGAGATGAGTGCTAAACACAAGGTTGAGAAGGATACCATAGGCAAGTCAGGTGATGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGACTATGATTCAGCACAGATTTTGATATTAGATCCCAGGGGACCTACAATAAATACATGGAATAAAATTTTCTTAGCAGCATGTTTGCTTTCACTGTTTGTGGATCCCCTTTTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCAACTGCTCTTGAAGTGTTCCTCACCATAATCCGGTCTCTGATAGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAAATTGCATCAAACTACATGCGAAAAGACTTCTGGCTTGATCTTGTGGCTGCTCAACCACTTCCACAGGCAAATGGGGTAATGATGGAAAAGGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACAGTGCCAGTATCATTATCTTGATTGCCAAAGCATGGCTGACCCAGATAGGATTGCTTGGTTAAGATCAAGCAATCTCTCTAGCCTATGTGATCAGAACAGTGACTTCTTTCAATTTGGCATTTTTACTGATGCTCTAAATTTGGAAATTACAGCCTCAAAATTCTTCAACAAGTACTATTACTGTCTGTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAAAATCTATTGACTGGCACACGAGTTGCAGAAATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTACTCATTGGAAATATGCAAACATACTTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGAACAGATACGGAAAGATGGATGCGTCACAGGCAGCTCCCTCGTTTCCTGAAGCAAAATGTAAGACGTCATGAACAATTCAGATGGGCTGCTACAAGAGGAGTTGATGAGGAAACTATTCTTAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGGGCTTGTGTGGTTCGTGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGACTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGCCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGGGGACTTGAAGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAACAACTGAGGTATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATAAAGGAGACAAGTGAGCTCAAGAGAAAGGAGAATATGATGATGGCTTTTGTGCCTGGAACTTGCACTGAACATTTCTCTGCACCTCTTCAAGCTCCAATGGGCACTATGTATGCTGCAAAACTAGCATCCGGCCCAAGGAAAGGTAGAAGCCTGAGATACGGACCTGAACTTGATATCCTTGGCTCACTGAGGAAGCCCCTTGAACCAGACTTCACTGATGATGACAGTTAA 1974 0.4336 MGSDRSRSVRFQDELETNTLMDNKEKHLSLVACDEMSAKHKVEKDTIGKSGDGRELSRVFSEDYDSAQILILDPRGPTINTWNKIFLAACLLSLFVDPLFFYLPVAKKDKCIDMSTALEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASNYMRKDFWLDLVAAQPLPQANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPQCQYHYLDCQSMADPDRIAWLRSSNLSSLCDQNSDFFQFGIFTDALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMRHRQLPRFLKQNVRRHEQFRWAATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVALPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRIKETSELKRKENMMMAFVPGTCTEHFSAPLQAPMGTMYAAKLASGPRKGRSLRYGPELDILGSLRKPLEPDFTDDDS* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1284 657 ProSiteProfiles cAMP/cGMP binding motif profile. 428 511 IPR000595 -
Vra2g1284 657 PANTHER PROTEIN CNGC15A 27 187 - -
Vra2g1284 657 PANTHER PROTEIN CNGC15A 187 654 - -
Vra2g1284 657 SUPERFAMILY Voltage-gated potassium channels 73 350 - -
Vra2g1284 657 SMART cnmp_10 428 559 IPR000595 -
Vra2g1284 657 CDD CAP_ED 428 559 IPR000595 -
Vra2g1284 657 SUPERFAMILY cAMP-binding domain-like 357 550 IPR018490 -
Vra2g1284 657 Pfam Ion transport protein 192 355 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra2g1284 657 Gene3D Jelly Rolls 426 546 IPR014710 -
Vra2g1284 657 Gene3D Helix hairpin bin 354 419 - -
Vra2g1284 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 187 654 - -
Vra2g1284 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1284 Vra-Chr2 19172645 19180098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1284 48 655 Ion Channels AT2G28260 60.245 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1284 K05391 - gmx:100804375 1204.89