Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1257 ATGTCTGAGAATATACACAGAATGGTAACAAGAGGAATGACCATTGATTCCAATTACGTAGTAGATGTTGATGAAAATGGAATGACAAATGGAATGACACAAAACTATGGACTTCAGCATCAATCTAGTCACTCTCACAATTTCATTTGGAGCAATTATTTGGATTTGGTTTGGTATCCATATCTTCCAATCTCATATATACAAGTTCCACTTCCCAGTACTAATGTAAGCTCATTAGAAGAGAATATAAGAATGGGTCCCCGAAGAAGAAGAAGACATCACCGTAGATTTCTCGATCAGCAATATCGTGCGCAAGACATCAGAGGTCACTCGAATTTTCATTCTTACGGAACTGCTTCACCGTATAGAGTTCCAGAAACAACAAATCATTCAAGAAGTTCTTCAATGCCCATACAAAATGCACCTAATAGAGACAACATGCATAATCTTCATCCTCCCGCATTTCGTGAATTTCCTTCGTATATGCTCATGGACACTGATGACATGTCAAACGAGACACTTTATATTGTGCAAGAGTTTTCTTCATTAGGTGACCCTTATAGTGATATGCGTTTGGACATTGATGGCATGTCATATGAGGAACTTCTTGAGTTAAGTGAATGGATAAATGATAATTCGGAAAGGGGTTTGTCAGAAGACATTATTACAAGATATATGCAGACAAAAAGTTATCTATTACAAGAGAACTTGGAGAATCAGGAATATGAAATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATATCATGCAGAGTGTGTAAAGAGATGGTTACATGAGAAAAATGTTTGTCCCATGTGCAAATCAACAGGATTGATTATTGAATAG 882 0.3617 MSENIHRMVTRGMTIDSNYVVDVDENGMTNGMTQNYGLQHQSSHSHNFIWSNYLDLVWYPYLPISYIQVPLPSTNVSSLEENIRMGPRRRRRHHRRFLDQQYRAQDIRGHSNFHSYGTASPYRVPETTNHSRSSSMPIQNAPNRDNMHNLHPPAFREFPSYMLMDTDDMSNETLYIVQEFSSLGDPYSDMRLDIDGMSYEELLELSEWINDNSERGLSEDIITRYMQTKSYLLQENLENQEYEICIICQDEYKNKEEIGILQCGHEYHAECVKRWLHEKNVCPMCKSTGLIIE* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1257 293 MobiDBLite consensus disorder prediction 118 145 - -
Vra2g1257 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 290 IPR045191 GO:0061630
Vra2g1257 293 Pfam Ring finger domain 245 286 IPR001841 -
Vra2g1257 293 SMART ring_2 245 285 IPR001841 -
Vra2g1257 293 PANTHER OS04G0185500 PROTEIN 37 290 - -
Vra2g1257 293 ProSiteProfiles Zinc finger RING-type profile. 245 286 IPR001841 -
Vra2g1257 293 SUPERFAMILY RING/U-box 232 288 - -
Vra2g1257 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 289 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1257 Vra-Chr2 18130879 18137498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1257 161 290 C3H Transcription Factor Family AT2G15530 40.602 9.56e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1257 - K19041 vra:106752786 253.062