Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1256 ATGCAGGAGATGGGTACAGAGTCAAGGGGTGCACACATTACCCCACCAAGAATACATCAAGAGGAGGGGGAAGGGTTGATTAGTAGCTTGGCAAGCCATAACTTCATCTTGACCAAATTGGTCGAGGAGCTAGGTCTGGAGAAGGAGGAAACTCCACCATATCGGGAATTTCCTTCGTATATGCTCATGGACACTAATGACATGTCATACGGGACACTTTATAATATGCAAGAATTTCCTTCATTAGGTGACCCTCATAGTGATATGCGCTTGGACATTGATGGCATGTCATATGAGGAGCTTCTTGAGTTAAGTGAATGGATCAATGACAACTCGAAAAGGGGTTTGTCAGAAGACATTATTACAAAACATATGCAGACCAAAAGTTATCTACTACCTGAGAACTTGGGGGATCAAGAATCTGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAGTGCGGACATGAATATCATGCAGAATGTGTAAAGAGATGGTTACATGAGAAAAATGTTTGTCCCATATGCAAATCAAAAGGATTGACTATTGAAAAGACACGGAAAATTAAATCTACATAA 603 0.3947 MQEMGTESRGAHITPPRIHQEEGEGLISSLASHNFILTKLVEELGLEKEETPPYREFPSYMLMDTNDMSYGTLYNMQEFPSLGDPHSDMRLDIDGMSYEELLELSEWINDNSKRGLSEDIITKHMQTKSYLLPENLGDQESDICIICQDEYKNKEEIGILQCGHEYHAECVKRWLHEKNVCPICKSKGLTIEKTRKIKST* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1256 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 72 190 IPR045191 GO:0061630
Vra2g1256 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Vra2g1256 200 SMART ring_2 144 184 IPR001841 -
Vra2g1256 200 Pfam Ring finger domain 143 185 IPR001841 -
Vra2g1256 200 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Vra2g1256 200 SUPERFAMILY RING/U-box 134 190 - -
Vra2g1256 200 PANTHER OS04G0185500 PROTEIN 72 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1256 Vra-Chr2 18098813 18111210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1256 77 189 C3H Transcription Factor Family AT2G15530 45.690 9.58e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1256 K19041 - vra:106752786 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1256 2 18098813 18111210 Vra2g1256 2 18098813 18111210 ECH