Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1255 ATGGGATTAACTTCTTCTACTCTGACATCCTTCACATCATTCCTTTGCCTCTATGTGTTTTGTGTTAATGCAGTCACCTACAAAGAAATTTTGCAAACAGGACAATCACTGGGAACCTCAGACTCGGTTGTTTCTGATAGCGGGAAGTTTGAATTGTGTTTTTTCAACAGAGTCAGAGATAATTCAACCAAGTACTACGTTGGTATACGGTATAAAAGGGTTCCAAACGACAAGAACAAGATTGTGTGGGTTGCAAACCGAGACTACGCACTTGAAACATCCTCAGCAGTTCTCACCTTTGAACCTGATGGAAATTTTGTGATCATGGATGGACAAGTCACATACCGTGTCAACAAGGTTTCAAACAATTTCAGTATCTATGCCATGCTCTTGGATTCAGGAAACTTGATACTGCTTAAAACCTCAAATAAACAGATTTTGTGGCAGAGTTTTGATCATCCGACGGACACCCTTTTACCCGGAATGAAACTAGGACATGATGAAGGAAACACTTGGTCATTGCGATCATGGACAAGTGCAGATGACCCTGCTCCAGGAGCTTTTTCCCTCGAATATAATCTGGGCAGGGTCAGCCTAATCATCAACAATGGCTCTAATGCGTTCTGGATTGACGACCACTACAACGATACTATTGGCAATTTTATTCGCCGAAGTGGTGTGTCTATGGACAGCTATTTCACTTTGCCAGTTGGTAATGACTCTAGGTTGGTACTAGAAGTGTCTGGTGAGCTCAACCAGGAATATTGGTCTGATGAACAACAACATTGGGTTTCTATTCAGTCATCCAAGTGTGCTAATAATTCGTGTGGAGCCTTTTCCATCTGTAACCCGAAAGCTCGTGACCCTTGTGACTGTCTTTATGGTTTCAGGCCCTCTGATGCTGATTCTTGGAACAATGGGAACAAATCTGCTGGCTGTGTAAGGAACAAAGACTTATCGTCCTGCAGTATCGGTGCTGAATCCAACAACGATAAATTCAAGCAACTATATAATGTCAAATCACCAACTTTGGACAGTCTCAGGACGATCAATACAACAAAAGAGTGTGAAAGTACTTGTTCTAGAAATTGTTCTTGCCTTGCTTTCGCTTATTATTTGAACGGTGATTGCCAGTTGTGGCTTGGTTCTGTATTGAATTTAAAGAACGTCTCAACAGATGTGGACAATTCTGATAATAGCAATCCAATTTTTTACCTAAGACTTGCTGCCTCAGAATTAGATGATTCTGGTTCGAACAAAACAAGAGCAAAAGAACCAGGATATACTGTCAACAAAAATGTACTTCTTCTGATTGTTATATTGATCTCCTTTCTAGCTTTTCTTATATTGGGCATTTTAGTTTACTGGATTAGAAAGAAGAGGAGAAAAGGGGAAGATTTGCTCCATTTTGATATAAGCATGAGCATGAAAGTTGAAGATTCTGAGCTTACTGAATCAGATAGGAGTGCCAAAGTGAAGAAGGAAGTGAAATTGCCTTTATTCAGTTTCGAGAGTGTTGCAGCTGCAACTGATAATTTCTCAGATGCAAATAAACTTGGTGAGGGGGGCTTTGGACCCGTTTACAAGGGTACATTATTTAATGGGGATGAGGTTGCGGTGAAAAGACTGTCACGGAGATCTGGTCAAGGATGGGAAGAGTTGAGAAATGAAGCTTTGTTAATTGCAAAACTTCAACACAACAATCTTGTTAGACTTCTTGGTTGCTGCATTGATCGAAATGAAAAGATGCTGATTTATGAATTCATGCCTAATAAAAGCTTGGATCTTTTCCTTTTTGATGCTACAAAGAAACAGATGTTAGATTGGGGAACTAGAGTCAGAATAATCGATGGGATTGCGCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATGAATCCAAAAATATCAGATTTTGGATTGGCAAAAATATTTGGTGATAATGAACTTCAAGCAAATACAAATCGAATCGTTGGAACATATGGTTACATGGCTCCTGAATATGCTATAGAAGGACTTTTCTCAGTAAAATCAGACGTATTTAGTTTTGGGGTCCTTTTGTTGGAGATTGTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACGAGTTCCTTCAATCTTCTTGGATATGCTTGGGATCTTTGGACAAGAAATTCAGGACTGGATCTAATGGATAGTGCATTGGATGACAGTGATACTTTAAGTAATAACAGTATGCATACTGTGCCAAGATATGTGAACATAGGACTTCTTTGCGTTCAAGAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGGAATGACACTGTGCCCCTTCCTTCTCCTAAACCACCTGCATTTCTTAATGTCAGAGGTGATCATAGTTCATCATTGCCCTCCACCTCCACAGAAAGATTTTCAGTGAATGTTATCACAGATACAATTCTGGAAGCGAGATGA 2508 0.3963 MGLTSSTLTSFTSFLCLYVFCVNAVTYKEILQTGQSLGTSDSVVSDSGKFELCFFNRVRDNSTKYYVGIRYKRVPNDKNKIVWVANRDYALETSSAVLTFEPDGNFVIMDGQVTYRVNKVSNNFSIYAMLLDSGNLILLKTSNKQILWQSFDHPTDTLLPGMKLGHDEGNTWSLRSWTSADDPAPGAFSLEYNLGRVSLIINNGSNAFWIDDHYNDTIGNFIRRSGVSMDSYFTLPVGNDSRLVLEVSGELNQEYWSDEQQHWVSIQSSKCANNSCGAFSICNPKARDPCDCLYGFRPSDADSWNNGNKSAGCVRNKDLSSCSIGAESNNDKFKQLYNVKSPTLDSLRTINTTKECESTCSRNCSCLAFAYYLNGDCQLWLGSVLNLKNVSTDVDNSDNSNPIFYLRLAASELDDSGSNKTRAKEPGYTVNKNVLLLIVILISFLAFLILGILVYWIRKKRRKGEDLLHFDISMSMKVEDSELTESDRSAKVKKEVKLPLFSFESVAAATDNFSDANKLGEGGFGPVYKGTLFNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDLFLFDATKKQMLDWGTRVRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDSHMNPKISDFGLAKIFGDNELQANTNRIVGTYGYMAPEYAIEGLFSVKSDVFSFGVLLLEIVSGKKNTGFYQTSSFNLLGYAWDLWTRNSGLDLMDSALDDSDTLSNNSMHTVPRYVNIGLLCVQESPEDRPTMSDVVSMIGNDTVPLPSPKPPAFLNVRGDHSSSLPSTSTERFSVNVITDTILEAR* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1255 835 Pfam S-locus glycoprotein domain 220 299 IPR000858 GO:0048544
Vra2g1255 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vra2g1255 835 ProSiteProfiles PAN/Apple domain profile. 322 409 IPR003609 -
Vra2g1255 835 CDD B_lectin 29 154 IPR001480 -
Vra2g1255 835 SUPERFAMILY Protein kinase-like (PK-like) 499 820 IPR011009 -
Vra2g1255 835 Pfam Protein tyrosine and serine/threonine kinase 517 787 IPR001245 GO:0004672|GO:0006468
Vra2g1255 835 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Vra2g1255 835 ProSiteProfiles Protein kinase domain profile. 513 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1255 835 CDD PAN_AP_plant 320 409 - -
Vra2g1255 835 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 831 - -
Vra2g1255 835 Pfam PAN-like domain 327 386 IPR003609 -
Vra2g1255 835 PIRSF SRK 2 835 IPR024171 GO:0004674
Vra2g1255 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 183 IPR036426 -
Vra2g1255 835 SMART ntp_6 328 400 IPR003609 -
Vra2g1255 835 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 25 831 - -
Vra2g1255 835 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Vra2g1255 835 SMART blect_4 28 154 IPR001480 -
Vra2g1255 835 Pfam Domain of unknown function (DUF3403) 790 835 IPR021820 GO:0004674
Vra2g1255 835 Gene3D Transferase(Phosphotransferase) domain 1 589 793 - -
Vra2g1255 835 CDD STKc_IRAK 519 788 - -
Vra2g1255 835 Gene3D - 23 152 IPR036426 -
Vra2g1255 835 SMART serkin_6 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1255 835 Pfam D-mannose binding lectin 81 177 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1255 Vra-Chr2 18052588 18056456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1255 410 804 Receptor kinase-like Gene Family AT4G23190 50.125 1.05e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1255 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1255 - - pvu:PHAVU_011G149500g 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1255 2 18052588 18056456 Vra2g1255 2 18052588 18056456 ECH