Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1229 ATGGATGTTGAAAAAGCTCTATACCTCTTGTTGCTTCTCCTCACTCTTCTCTCAAGCTCCAAAGCCAAGAAGTTCAACGTTGGTGGAAGCCAAGGCTGGGTTCCAAATCCTTCCGAGAGTTACAACAACTGGGCTGGAAGAAACCGATTCCAAATCAATGACACAATAGTTTTCAACTACAAGAAAGGTTCGGACTCGGTTTTGGAAGTGAAGAAGAAGGAAGATTATGAGAAGTGCAACAAGACAAACCCAATCAACAAGTTCGAAAATGGTGACACTGAGTTCAAGTTTGACCGATCAGGACCATTTTACTTCATTAGTGGAAAAGATGGAAACTGTGAAAAGGCTCAGAAATTGATTGTTGTTGTTTTATCCCCTAGAAAATCGCCATCACCTTCATTACCACCATTGTTGCCACCAAAATATTTGCCTTCACCCTCACCAAAGACAAACCCACCAACCGTTTCGCCTTCCTCTCCACCGTCCCCAGCGGTTCAACCTCCGTCAAACTCAATATCTCCGAAACCGGCCAACGGGCCTTCAGCGGCAGCTCCGGGACCTGAAAACTGGTATTCAGCGACAGCTCCGGCACCTGAAACCATGTACCCGGTGACTTCTCCTCCGGCACCGCCACCGGAGACGGGAACTCCACCGCCGTTTCCGGCGGGGCCAATTTCTCCACCTCAGTCATCCGCGGGGCCAACTTCCCCACCGCAGTCGCCGGCGGGGCCAACTTCTCCACCGCAGTCGCAGCCGTCTAGTTCAACGGCGCCGTCACCGACGAATGGTGGTTTTGCCAAGGCTCCTTCAAACGCTTTGGTGTATTTCGTTACAATTGTCGTTGGTGGTGTTATGTTGCGTTATTGA 867 0.5017 MDVEKALYLLLLLLTLLSSSKAKKFNVGGSQGWVPNPSESYNNWAGRNRFQINDTIVFNYKKGSDSVLEVKKKEDYEKCNKTNPINKFENGDTEFKFDRSGPFYFISGKDGNCEKAQKLIVVVLSPRKSPSPSLPPLLPPKYLPSPSPKTNPPTVSPSSPPSPAVQPPSNSISPKPANGPSAAAPGPENWYSATAPAPETMYPVTSPPAPPPETGTPPPFPAGPISPPQSSAGPTSPPQSPAGPTSPPQSQPSSSTAPSPTNGGFAKAPSNALVYFVTIVVGGVMLRY* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1229 288 PRINTS Proline rich extensin signature 124 136 - -
Vra2g1229 288 PRINTS Proline rich extensin signature 145 161 - -
Vra2g1229 288 PRINTS Proline rich extensin signature 165 177 - -
Vra2g1229 288 PRINTS Proline rich extensin signature 180 201 - -
Vra2g1229 288 PRINTS Proline rich extensin signature 206 222 - -
Vra2g1229 288 PANTHER BLUE COPPER PROTEIN 4 286 IPR039391 GO:0009055
Vra2g1229 288 MobiDBLite consensus disorder prediction 201 254 - -
Vra2g1229 288 CDD OsENODL1_like 23 123 IPR041846 -
Vra2g1229 288 MobiDBLite consensus disorder prediction 127 268 - -
Vra2g1229 288 MobiDBLite consensus disorder prediction 129 174 - -
Vra2g1229 288 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Vra2g1229 288 Gene3D - 21 128 IPR008972 -
Vra2g1229 288 SUPERFAMILY Cupredoxins 22 124 IPR008972 -
Vra2g1229 288 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055
Vra2g1229 288 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 4 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1229 Vra-Chr2 17269229 17270472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1229 3 174 Phytocyanin Superfamily AT5G53870 49.721 2.22e-50 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1229 - - gmx:100795901 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1229 2 17269229 17270472 Vra2g1229 2 17269229 17270472 ECH