Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1214 ATGTCACATTCTGGGAAACCCGTGTCCGAGTTAGGGCTGAGCGACAGGTTGCGCGACTCACTGAGTTGCTCTGATGATACCAACAAGCCCGATTTCAGAGAACTCGATTTGGGTTCGCCGGTTTCTACATTGCGGCCACGCCAGCAGTTCCACCACCACAGTGCGCCGACGAGTAGTAACAGTAGCAGTAGTAGCGGCGGCTCGACCGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGTAGATCCCATTCTGGTGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTTTCCAAACCGGGTCACCGGAGATCTAGTTCTGGTCAGAGTTTGAGTCGGAGTCAGAGTCAGAGATCCCCGTCGTCGTCCTCGGCTGCCGTGAATTCCCCGCCACTGAATGTTCTCCCGGCTGGGAACATTTGCCCGTCAGGGAGGGTTCTCAAGGCGGCGACGGTGGCAGCAGCGGCGAGCCGGAGCTCCAGGAGTGATGTCTTGGGGTCGGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGCAAGGGGGGTGGTGGGAACAGCGGTGGTGGTGATGCGTCGAGTGTTAAGATCGGCGGCGGCGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTTCAAGAGAGGGCACTTTGGTGAGGCTTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCCGCTTACCGGAGCAACCGGGCGGCAGCATTGACTGGATTGGGACGACTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACCCTGTTTTTAAGGTTAGGACAGGTTGAGGATGCAAGGAAGCACCTTTGTTATCCTGGGTTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGGGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGGTGCTGAATCGTGTTTATCAGGGATTCCCAAAAGCGAGCAGCGTCCCAGTTCCTTATCACAGGCAAGATTTTTCGGGATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATAGACCCCAGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTACGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCGGCATATGGAGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCCGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATCGAGGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAGTGAAGGATTATGAACTATTGCGGAGAGAATTGCCAGATGACAATGACGTTGCCGAAAATCTGTTTCATGCACAAGTAGCACTAAAGAAATCTCGTGGGGAAGAAGTACGTAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCGGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTGCAATGTAAGCAGATATCTCCTTTCGTGGTTACACTCTGCAGTCGCTATCCATCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCTCTGCTGAGAATGTTAGAGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCTATTAGGCATTACAGCTTGTAG 2055 0.5056 MSHSGKPVSELGLSDRLRDSLSCSDDTNKPDFRELDLGSPVSTLRPRQQFHHHSAPTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSSSGQSLSRSQSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATVAAAASRSSRSDVLGSGTGNYGHGSIMRGGKGGGGNSGGGDASSVKIGGGDSGKRVDPEEVKRMGNEEFKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDGAESCLSGIPKSEQRPSSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVRNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPFVVTLCSRYPSINFLKVDIQASPAVASAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1214 684 SMART tpr_5 518 551 IPR019734 GO:0005515
Vra2g1214 684 SMART tpr_5 450 483 IPR019734 GO:0005515
Vra2g1214 684 SMART tpr_5 484 517 IPR019734 GO:0005515
Vra2g1214 684 SMART tpr_5 246 279 IPR019734 GO:0005515
Vra2g1214 684 SMART tpr_5 404 437 IPR019734 GO:0005515
Vra2g1214 684 SMART tpr_5 212 245 IPR019734 GO:0005515
Vra2g1214 684 Coils Coil 524 544 - -
Vra2g1214 684 Gene3D Tetratricopeptide repeat domain 210 570 IPR011990 GO:0005515
Vra2g1214 684 MobiDBLite consensus disorder prediction 42 133 - -
Vra2g1214 684 Gene3D Glutaredoxin 577 683 - -
Vra2g1214 684 SUPERFAMILY Thioredoxin-like 487 682 IPR036249 -
Vra2g1214 684 Pfam Thioredoxin 591 676 IPR013766 -
Vra2g1214 684 MobiDBLite consensus disorder prediction 158 215 - -
Vra2g1214 684 Pfam Tetratricopeptide repeat 486 517 IPR001440 GO:0005515
Vra2g1214 684 ProSiteProfiles TPR repeat profile. 404 437 IPR019734 GO:0005515
Vra2g1214 684 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 10 682 IPR044534 -
Vra2g1214 684 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 10 682 - -
Vra2g1214 684 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Vra2g1214 684 MobiDBLite consensus disorder prediction 1 137 - -
Vra2g1214 684 MobiDBLite consensus disorder prediction 19 33 - -
Vra2g1214 684 CDD TRX_family 589 670 - -
Vra2g1214 684 Pfam Tetratricopeptide repeat 406 437 IPR019734 GO:0005515
Vra2g1214 684 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Vra2g1214 684 Pfam Tetratricopeptide repeat 218 278 - -
Vra2g1214 684 MobiDBLite consensus disorder prediction 158 172 - -
Vra2g1214 684 SUPERFAMILY TPR-like 212 440 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1214 Vra-Chr2 16909233 16913345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1214 449 594 U-box Gene Family AT3G07370 28.415 9.54e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1214 - - gmx:100805790 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1214 2 16909233 16913345 Vra2g1214 2 16909233 16913345 ECH
Vra5g2812 5 35674910 35678398 Vra2g1214 2 16909233 16913345 PCT