Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1200 ATGGATAGTGGCTACTACAATCAGCAACATCTCCCTCACCTCGACAACACTAATGAACCACATTTACCTCCTGGCTTCAGGTTCCATCCGACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGTTCCTTCACTGGGCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAACCATGGGAGCTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTTTATAGCCTTCGTGACCGGAAGTACCCAACTGGTTTACGCACCAACAGGGCCACGGAGGCTGGTTATTGGAAAGCCACCGGAAAAGACAGAGAGATCTATAGCTCCAAAACCTGTTCCCTCGTTGGAATGAAGAAAACCCTGGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCAAGAAGCTCAAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTATCAGCCGCCGCAGCCACCGGCAGTTCGAAGAAAACAAGAATGAGCACATCGAACACAAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTGTTCCATTTACCTCCCACCGCTTCTAGAATCTTCTCCTTACGCCACCAGCGGCAGCGCCGCCGCAACGTTCAACGACCGCGAAAACTACTCCTTCGAAAGTGCCGCCGCCACCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGACGCTGCCGCCTTCAACCACCTCGCTCCGCCGCCGGAACCGCCACTCGATCCTTTCTCCCGCTTTCACAGGAACAACATTGGAGTATCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCAAGGCGGTTCTGACGTACCAAATTTTACCGCCATAGCAAACTTGCCGGCGCCGGAGGATCAGAGGGTGGCTGACGGCAGTTCTGGCATGCCGATTGTACCGTCCGAATTGGACTGCATGTGGGGCTATTGA 1092 0.5311 MDSGYYNQQHLPHLDNTNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAAATGSSKKTRMSTSNTSSNMSLCPEPGSPCSIYLPPLLESSPYATSGSAAATFNDRENYSFESAAATANQREHVSCFSTMSTDAAAFNHLAPPPEPPLDPFSRFHRNNIGVSAFPCLRSLHDNLNLPFFFPPVVQGGSDVPNFTAIANLPAPEDQRVADGSSGMPIVPSELDCMWGY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1200 363 MobiDBLite consensus disorder prediction 180 208 - -
Vra2g1200 363 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
Vra2g1200 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 329 - -
Vra2g1200 363 SUPERFAMILY NAC domain 17 174 IPR036093 GO:0003677|GO:0006355
Vra2g1200 363 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Vra2g1200 363 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Vra2g1200 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 12 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1200 Vra-Chr2 16357065 16359657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1200 1 363 NAC Transcription Factor Family AT5G53950 50.758 5.06e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g1200 NAM 3.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1200 - - gmx:100788671 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1200 2 16357065 16359657 Vra2g1200 2 16357065 16359657 ECH