Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1197 ATGGCTCCCAGTGACAACAAATCCAACGATGTATCTGGGTCTAATTCGACCCGTTTGGACAAAGAGATCCGATACCGCGGGGTCAGGAAGAGACCCTGGGGCCGCTACGCCGCCGAGATCCGAGACCCTGGGAAGAAAACACGCGTCTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCGCGCGCGTATGATTCGGCGGCGCGTGATTTCCGCGGCGCGAAGGCGAAGACAAATTTTCCCACACACGCGGAACTTACCCACGTGGCGCGTAGCCCCAGCCAGAGCAGCACCCTCGAGTCCCCCTCTCCGCCGCCGCCGCTTGACCTCACTCTCACCCCACTCGCCGCCACCGGGGCGTTTGTCTTCCCTGTTGCCCGCCCCGTGGTTTTCTTTGACGCGTTCGCCCGTGCGGAGGTGCGGGCTTTCGATCTTCCCGTTACCGCTTTCCGCCGCACCGCCGTCGTCGCCACCACCCAGAGTGATTCCGACTCGTCCTCCGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTCGACCTTAATGTTCCTCCTCCGCCGGAGGTTGCATGA 582 0.6323 MAPSDNKSNDVSGSNSTRLDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDSAARDFRGAKAKTNFPTHAELTHVARSPSQSSTLESPSPPPPLDLTLTPLAATGAFVFPVARPVVFFDAFARAEVRAFDLPVTAFRRTAVVATTQSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1197 193 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vra2g1197 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 15 184 - -
Vra2g1197 193 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vra2g1197 193 MobiDBLite consensus disorder prediction 87 107 - -
Vra2g1197 193 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vra2g1197 193 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Vra2g1197 193 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vra2g1197 193 MobiDBLite consensus disorder prediction 1 16 - -
Vra2g1197 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 184 - -
Vra2g1197 193 MobiDBLite consensus disorder prediction 1 23 - -
Vra2g1197 193 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vra2g1197 193 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vra2g1197 193 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1197 Vra-Chr2 16215113 16216006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1197 21 156 AP2-EREBP Transcription Factor Family AT3G15210 60.897 4.81e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra2g1197 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1197 K09286 - gmx:100785455 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1055 2 11540168 11540975 Vra2g1197 2 16215113 16216006 ECH
Vra2g1197 2 16215113 16216006 Vra10g1293 10 18302143 18303252 ECH
Vra2g1197 2 16215113 16216006 Vra2g1197 2 16215113 16216006 ECH