Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1188 ATGGGAGTTCAAGAGAGAGACCCTCTGGCACAGTTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGAAAGGTTGCTGGGCACCATTTTTCTCTGCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCCGTGTTTGGAGAAAAAGAATGGTATTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGTTCACGGCCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCGACGGGAACTGATAAGGTTATCTCCACCGAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCCCGGAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGACCAACCTTTGGGGCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCACGTGGAAGACATGGTGGAATCGTTTCTGGAGATCGATGATAAGTGCTTCAATTTTCCTGGTGTGAACTCGCTCAAAACAATGCAACAACAGGACGAGAAATTCGGGTTTCAAAACATGAGATCCGGATTTTCTTCTGATTGGGTCACCCCACCAGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCGGAACCCAAGGAATGGTGAATTATGAGTTCAATGACTTATTTGTCCCTTCTGTACCGCCATTTGGTCACGTGGAGTTCATGTCAGGGGCACCCATGGAGGAGGAAGTTCAAAGCTGTGTGAGAACCCAACGGGCTGACGGAGCGGGATATTTTCAACAGAACCCGAATGCCCGTAATTTGTCCGGCTCCAACGAAACGTTTGGGTTGGGGTTGACGGATCAGCAAATCAGGTTCGGGTTACGGAACTAG 1011 0.4669 MGVQERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVETNLWGKECSNGSSPSSSSHVEDMVESFLEIDDKCFNFPGVNSLKTMQQQDEKFGFQNMRSGFSSDWVTPPDLDSISEFGSGCGTQGMVNYEFNDLFVPSVPPFGHVEFMSGAPMEEEVQSCVRTQRADGAGYFQQNPNARNLSGSNETFGLGLTDQQIRFGLRN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1188 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vra2g1188 336 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vra2g1188 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vra2g1188 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 314 - -
Vra2g1188 336 PANTHER NAC TRANSCRIPTION FACTOR 56 1 314 - -
Vra2g1188 336 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1188 Vra-Chr2 15977563 15979299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1188 1 251 NAC Transcription Factor Family AT3G15500 65.517 2.73e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g1188 NAM 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1188 - - gmx:100811301 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1188 2 15977563 15979299 Vra2g1188 2 15977563 15979299 ECH