Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1185 ATGTCGGTGCTGATTGTGACGAGCTTAGGGGACCTTGTTGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACAGCTCAAACTGGCGATCCAACTGGCACAGGAACTGGTGGTGATTCCGTTTACAAGTTTCTTTATGGCGATCAAGCTCGATTTTTCAGTGATGAAATTCATATTGATCTTAAGCATTCTAAAACTGGAACAGTTGCCATGGCAAGTGCTGGGGAGAACTTAAATGCTTCACAGTTCTATATCACACTGCGAGATGACCTTGACTACCTCGATGGCAAGCACACAGTCTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGACGACAAAGGAAGACCATATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGATGATCCTTCTCAACTATCGGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTACGACTTGAAGATGATTGGGTGCCCATGGATGAGCAATTAAATCCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAACCTCCTGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCAGAAATCATCCGAGATCACAAAACTGGTGACAGTTTATGCTATGCTTTCATAGAATTTGAGGACAAACGGGCATGTGAGGAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAATTGTGGTCCCAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGAGGATGCTTCAAATGTGGCTCTACAGATCATATTGCCAAGGACTGCACTGGAGATGCTACAATGAAACAACCACAAACAAAATACATTTTAAAGGATGATAATACCCAACGTGGTGGAGATAATTCGAGATATGACATGGTTTTTGATGGAGATGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCGAAAGCATGACAGGGATGACCCAGTTGAGAGAAAAGTTAGGGAAGAAAATTTTAAAGATCATAGAAGTAGTAGGCATCAGGATACGGTAAGAGATAGGTACGGTGATAGAAGCAGAGAGCATGGGGGAAATGGAGAAAACAAAGCACGATATGACAGAGGTGCAAGAGATTTGGATTCGAATGCTGACAAGAAAGACAGAGATAGGCACAAGGGTAGACATGGAAATGATTACAGGTGGAAAGTTGATCATGAATCTAGAAAAGAAGAGGATGATGGCTACAAGCGTAAAGATGAGCGAGACTCTGGAAGAAGATACGAAGAAGATAACTACAAGCATAAAGATGAGCGAGACCCTAGAAGAAGAGATGAAGATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGGTTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGATGTGAAGATTGATTCTGGACGAAGAAAGAGAAGTCCAGGTGATGATGATTACAAAAATGGAAGGAAAGATGAAGATTACAGACATAGAAAGGAAGAACGAGGGTATAAAAGGCAAGATATTGAAGCTGATGAGGATCACAAACGTAGAAGGGAGGATGGAGATTACAGACATAGAAGGGAGGAACGTGGACACAAAAGACAACATGTTGAAGCTGATGATTATCCTCATAAGAGGCATCATGGTGACAGGAGATGA 1923 0.4082 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDDKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKRACEEAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQTKYILKDDNTQRGGDNSRYDMVFDGDDNPESPRQDVKHRKHDRDDPVERKVREENFKDHRSSRHQDTVRDRYGDRSREHGGNGENKARYDRGARDLDSNADKKDRDRHKGRHGNDYRWKVDHESRKEEDDGYKRKDERDSGRRYEEDNYKHKDERDPRRRDEDDRRNTDSSHLERRNDRGYRKRPEDSGKQDVKIDSGRRKRSPGDDDYKNGRKDEDYRHRKEERGYKRQDIEADEDHKRRREDGDYRHRREERGHKRQHVEADDYPHKRHHGDRR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1185 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Vra2g1185 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Vra2g1185 640 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Vra2g1185 640 MobiDBLite consensus disorder prediction 372 640 - -
Vra2g1185 640 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Vra2g1185 640 Gene3D - 1 173 IPR029000 -
Vra2g1185 640 CDD cyclophilin_RRM 4 169 IPR035538 -
Vra2g1185 640 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Vra2g1185 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 MobiDBLite consensus disorder prediction 365 640 - -
Vra2g1185 640 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Vra2g1185 640 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Vra2g1185 640 Gene3D - 324 376 - -
Vra2g1185 640 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 503 IPR035542 -
Vra2g1185 640 CDD RRM_PPIL4 240 322 - -
Vra2g1185 640 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Vra2g1185 640 SMART rrm1_1 244 317 IPR000504 GO:0003723
Vra2g1185 640 Gene3D - 178 323 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1185 Vra-Chr2 15882484 15902694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1185 7 166 U-box Gene Family AT5G67530 40.625 2.55e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1185 K12735 - gmx:100776900 1076.62