LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1170	ATGATGTCCAGATCGTATACAAATCTTTTAGATTTGGCCTCTGGGAATTTCCCGGCAATGGGGAGGGAGTCTAGGGAGAGGAGGCGGATGCCGAGGGTTATGAGTGTTCCAGGGTTTCTCACTGAGGTAGATGATGATCAGGCAGTTAGTGTTTCCTCCGATAACCCGTCGACAATTACTACGGATAGAATGATCATTGTGGCTAACCAGTTACCATTGAAGGCAAAGCGAAGAGAGGACAACAAAGGGTGGTCTTTCAGTTGGAATGAAGATTCGTTACTTTTACAGCTTAAGGATGGACTTCCGGATGACATGGAAGTTCTTTATGTTGGTTCCTTACGCGTAGATATTGATCCAGCAGAACAGGATGACGTGTCTCAGAATTTGTTGGATAAATTCAAATGTGTTCCGACTTTTTTACCTGCTGACGTTTTGGCAAAATTTTATGATGGTTTTTGTAAAAGGCAGTTGTGGCCACTTTTTCATTACATGTTACCATTTTCAACTGACAAAAGCCATCGATTTGATCGCACTTTGTGGGAAGCTTATGTGCTAGCAAACAAGCTATTTTTTCAGAAGGTAGTTGAAATAATAAACCCTGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTGCCTACTTTTATTAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATTTACAGGACTCTTCCTGTAAGGGAAGAGATACTGAAAGCTTTGCTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGCTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCTAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGGACCATCAGTATTAAGATTATGCCTGTTGGTATTCACATGGGTCGGATTGATTCAGTCATGAGAATGGCAGTTGAGGAGACCACAGTTAAGGAGCTCAAACAGAAATTTGAAGGAAAAACCATCTTACTTGGTGTTGATGACATGGACATTTTTAAAGGAATAAATTTGAAGATTTTGGCAATGGAGCAGATGCTCAGACAGCATCCTAAATGGCAAGGAAGAGCTGTTCTGGTCCAAATAGTTAATCCTGCTAGAGGGAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCACCAGGATCAACAGAGTGTTTGGGCGGCCTGGTTATGAACCTATTGTTTTTATAGATAGAGCAGTATCTATTGCTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTCACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGATTCTGAATCATGTTCTAATGCCAGTGACCCAAAGAAGAGTATGCTGGTGATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATTCGTGTCAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCTATCTCAATGAGTGATGGGGAGAAACAGTTGCGGCATGAGAAGCATTACCGGTATGTCAGCACCCATGATGTTGCTTACTGGTCACGTAGTTTTTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAGAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGATCCTAATTTTAAAAAGCTCTCAATTGATGCTATGGTCTCAGCTTACAAGAGGGCAAAGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCGCAGAACTCCATTAACAAGAGTCCAAGCAAGGAGGTCTTGTCTATTATGGAATCACTTAGTGCAGACCCAAAAAATATTGTTTTTATTGTTAGTGGAAGGGGGAGAGAGAGCTTAAGTGAGTGGTTTGCTCCCTGCGGAAAACTTGGAATTGCCGCAGAACATGGGTACTTCTTGAGATGGGGCCACAATGGAGAATGGGAAATTTGTGGTAAGTCCTCCGACTTTGGATGGATGCAGATAGCTGAACCTGTGATGAAACTATATACTGAGGCAACTGATGGCTCCTCAATCGAAAGAAAAGAAAGTGCTTTAGTCTGGCAGTACCGTGACGCAGACCTTGGTTTTGGATCTTCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCACAGGATGTGAGCAAAGGTTTGGTGGCCGAAAGGATATTTTCGTCAATGGACGGGAAAGGCAAGCAGGCTGACTTTGTGCTGTGTGTTGGCGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGTAGTGCAATTTCAAGGAATATTCTTGCCTCCAATGCTTCTGTGTTTGCTTGCACAGTTGGACAAAAGCCAAGCAAAGCAAAGTATTATCTGGATGATACAACCGAGGTAACAAGCATGCTAGAATCTTTGGCCGAAGAATCAGATTCTTCACCCTGCATACAAGAAACTGGGGATTCCTCTCGGAGGCAAGTATCAGTTCAGGTTTCTCTGATTTAG	2607	0.4242	MMSRSYTNLLDLASGNFPAMGRESRERRRMPRVMSVPGFLTEVDDDQAVSVSSDNPSTITTDRMIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQNLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIDSVMRMAVEETTVKELKQKFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCTRINRVFGRPGYEPIVFIDRAVSIAEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISDSESCSNASDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKSRAILLDYDGTVMPQNSINKSPSKEVLSIMESLSADPKNIVFIVSGRGRESLSEWFAPCGKLGIAAEHGYFLRWGHNGEWEICGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMDGKGKQADFVLCVGDDRSDEDMFEIVSSAISRNILASNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDSSPCIQETGDSSRRQVSVQVSLI*	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1170	868	Pfam	Trehalose-phosphatase	596	830	IPR003337	GO:0003824\|GO:0005992
	Vra2g1170	868	Gene3D	-	592	693	IPR023214	-
	Vra2g1170	868	Gene3D	-	721	851	IPR023214	-
	Vra2g1170	868	Gene3D	Glycogen Phosphorylase B;	318	530	-	-
	Vra2g1170	868	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED	1	853	-	-
	Vra2g1170	868	CDD	HAD_TPP	594	833	-	-
	Vra2g1170	868	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	853	IPR001830	GO:0003824\|GO:0005992
	Vra2g1170	868	Gene3D	Glycogen Phosphorylase B;	56	317	-	-
	Vra2g1170	868	SUPERFAMILY	HAD-like	593	841	IPR036412	-
	Vra2g1170	868	Pfam	Glycosyltransferase family 20	63	546	IPR001830	GO:0003824\|GO:0005992
	Vra2g1170	868	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	595	799	IPR006379	-
	Vra2g1170	868	TIGRFAM	T6PP: trehalose-phosphatase	590	841	IPR003337	GO:0003824\|GO:0005992
	Vra2g1170	868	CDD	GT20_TPS	63	546	IPR001830	GO:0003824\|GO:0005992
	Vra2g1170	868	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	63	550	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1170	Vra-Chr2	15435992	15440991	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1170	1	847	Trehalose Biosynthesis Gene Families	AT1G06410	78.630	0.0	1393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1170	K16055		-	gmx:100800847	1630.54