Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1167 ATGGCCTCAATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCACGCCGGAGCTCCGATATGGAGACCGATAAGTTGCAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCTCCACCACTATTGGAGGCAAAAATGGGGAACCTAAGCAAACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGAGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCACTTTTCAATTTTAAACAGGAATTGGCTGGAGTATCATCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA 1272 0.4544 MASMPMGHHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKLQDMSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSSEMVNRLIPEHIRRQTGLSSPHSTGT* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1167 423 Pfam Protein kinase domain 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1167 423 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 27 415 - -
Vra2g1167 423 CDD STKc_GSK3 78 370 IPR039192 -
Vra2g1167 423 ProSiteProfiles Protein kinase domain profile. 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1167 423 PANTHER OS02G0236200 PROTEIN 27 415 - -
Vra2g1167 423 Gene3D Phosphorylase Kinase; domain 1 68 162 - -
Vra2g1167 423 SMART serkin_6 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1167 423 MobiDBLite consensus disorder prediction 1 46 - -
Vra2g1167 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vra2g1167 423 ProSitePatterns Protein kinases ATP-binding region signature. 89 113 IPR017441 GO:0005524
Vra2g1167 423 Gene3D Transferase(Phosphotransferase) domain 1 163 410 - -
Vra2g1167 423 SUPERFAMILY Protein kinase-like (PK-like) 82 392 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1167 Vra-Chr2 15382332 15387241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1167 87 405 MAP Kinase Gene Family AT3G59790 35.928 1.20e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vra2g1167 Pkinase 7.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1167 K14502 - gmx:100810924 775.007