LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1167	ATGGCCTCAATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCACGCCGGAGCTCCGATATGGAGACCGATAAGTTGCAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCTCCACCACTATTGGAGGCAAAAATGGGGAACCTAAGCAAACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGAGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCACTTTTCAATTTTAAACAGGAATTGGCTGGAGTATCATCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA	1272	0.4544	MASMPMGHHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKLQDMSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSSEMVNRLIPEHIRRQTGLSSPHSTGT*	424

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra2g1167	423	Pfam	Protein kinase domain	83	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra2g1167	423	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	27	415	-	-
Vra2g1167	423	CDD	STKc_GSK3	78	370	IPR039192	-
Vra2g1167	423	ProSiteProfiles	Protein kinase domain profile.	83	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra2g1167	423	PANTHER	OS02G0236200 PROTEIN	27	415	-	-
Vra2g1167	423	Gene3D	Phosphorylase Kinase; domain 1	68	162	-	-
Vra2g1167	423	SMART	serkin_6	83	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vra2g1167	423	MobiDBLite	consensus disorder prediction	1	46	-	-
Vra2g1167	423	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
Vra2g1167	423	ProSitePatterns	Protein kinases ATP-binding region signature.	89	113	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1167	Vra-Chr2	15382332	15387241	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1167	87	405	MAP Kinase Gene Family	AT3G59790	35.928	1.20e-59	197

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Vra2g1167		Pkinase	7.9e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1167	K14502		-	gmx:100810924	775.007

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