LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1160	ATGTCTTCCATTAACAACTCTTTCTTTGTTATGGTTTCTATTCTTTCTCTTTTGGCTTTTCCAAGCAATGCACAACTTTCTCCCTTCTTTTATGCCAGAACTTGCCCCAACCTTCAAACCATAGTGCACAGTACAATGAAACAAGCCATTGCCACAGAACCTAGACTTGGTGCTTCTATTCTTCGCTTGTTTTTTCATGATTGCTTCGTACAAGGCTGTGATGCATCAATTCTTTTGGACGACACAGCAACATTCACAGGAGAGAAAAATGCATTACCTAACATAAATTCAGTGAGGGGCTTCGAAGTTATTGATAACATAAAAAACAACGTTGAAGCTGCTTGCAATGCCACTGTGTCTTGTGCTGATATTCTTGCACTTGCCGCAAGAGATGGAGTAGTGCTACTAGGAGGACCCTCATGGATAGTGCCTCTAGGAAGAAGAGATTCAAGAACAGCAAATCAGAGTGCAGCCAACAGCGAAATCCCTTCACCTTTCTCAAACCTCCCCATCCTGATATCCGCGTTTGCAGCCAAAGGTCTGACACCAAGGGACCTAACAGCGCTTTCAGGAGCCCACACAATTGGCAAAGCACAGTGCCAATTCTTCAGGACTCGCATATACAACGAAACCAACATTGATCCTAACTTTGCCGCCACAAGAAGGGCCAATTGTCCTATTACTGGAGGGGACTCCAACCTGGCCCCTCTTGACCCCGTCACACCAACCGGTTTTGACAACGAGTACTACGCTAACCTTCTGAACCAACGTGGCCTTCTCCACTCTGACCAAGAGCTTTTCAATGGTGGGTCTCAAGATGTCCTTGTGAGTACCTATGCTGAGGGTACTATTACCTTTTTCACGGACTTTGCTATTGCCATGGTGAAGATGGGCAACATTAGTCCTCTCACTGGGACCAATGGGGAGATCAGAAGGAACTGCAGGGTGGTGAACTGA	957	0.4587	MSSINNSFFVMVSILSLLAFPSNAQLSPFFYARTCPNLQTIVHSTMKQAIATEPRLGASILRLFFHDCFVQGCDASILLDDTATFTGEKNALPNINSVRGFEVIDNIKNNVEAACNATVSCADILALAARDGVVLLGGPSWIVPLGRRDSRTANQSAANSEIPSPFSNLPILISAFAAKGLTPRDLTALSGAHTIGKAQCQFFRTRIYNETNIDPNFAATRRANCPITGGDSNLAPLDPVTPTGFDNEYYANLLNQRGLLHSDQELFNGGSQDVLVSTYAEGTITFFTDFAIAMVKMGNISPLTGTNGEIRRNCRVVN*	319

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1160	318	Pfam	Peroxidase	43	281	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vra2g1160	318	CDD	secretory_peroxidase	25	317	IPR033905	GO:0004601\|GO:0042744
	Vra2g1160	318	Gene3D	-	30	315	-	-
	Vra2g1160	318	ProSitePatterns	Peroxidases proximal heme-ligand signature.	185	195	IPR019793	-
	Vra2g1160	318	ProSitePatterns	Peroxidases active site signature.	57	68	IPR019794	GO:0004601
	Vra2g1160	318	Gene3D	Peroxidase, domain 2	163	297	-	-
	Vra2g1160	318	PRINTS	Plant peroxidase signature	35	54	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vra2g1160	318	PRINTS	Plant peroxidase signature	59	79	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vra2g1160	318	PRINTS	Plant peroxidase signature	99	112	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vra2g1160	318	PRINTS	Plant peroxidase signature	118	128	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1160	Vra-Chr2	15315348	15317308	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1160	24	318	Peroxidase	AT5G05340	62.626	1.21e-135	386

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1160	K00430		-	gmx:100810392	497.664

Showing 1 to 1 of 1 entries