Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1146 ATGGAAGAGGGACGAGAAGATGCCATGCCAGCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGAATCAGTTTCCTTAAGCTCTCAAGATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAAAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAATTCAAATCCACCAGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCGATCAAATGTAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTTGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGCTTAGACTCATACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCATGTGATTCACCATTAGAACCAAATAGTCCTTTATATGGAGTTTCAGATAGTGTTGAAAAGGAGGAAAATCTCCAATTCCACAGAAGATTTGAAGTATCTTCAAATGCATCTGGCCTTCCCCTGCGAAACAGGATGTTACGATCATATACCAGTCTAGAAAGAAATTTGAGTTTTTCACACAGTGAACCCAACATTGCAACTGCGTTTGGTCGGCGGAGTCGGAGAAAGGTCATTGCTGATCAAAGGACTGCTAGTTCAAGTCCAGAACATCCATCACTGCGAGCACATGGACTGTCTAAGCTTAGTGGTGACAGAACTGCTTTTAGAGATTTTGCTGATGACCAGTCTACACCAAGATCCAGCTATAAATCAGATGGTGCTTCCTCATCAGAAGCTCGTCGAATAAGAAGAAGAAGTATCAGCATGACGCCAGAGATTGGCGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAGAACGTCTTCTGAGAGAGAAAGAGGCCGGTGATAGTTCATTGTCCCATTCACTAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATCTTGATGGTCATCAAGAGAGATCCCCCTTGTATTCACTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAATCTTCTGAGAGAAGTGGAGTGTCAGAATATCCAATGAATGATGAACTGGAGTCTACTTGGAATAAAGTTCTTCAATCTCCAATGTTCAATGATGGACCTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGTTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGACTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCGCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATATGCCGGGGCCTAATGCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCTAATTGTCTTGTGGACAAGCATTGGACAGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTAGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCTCCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAATGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTATTCTCTGTTTTGA 2451 0.4235 MEEGREDAMPAERRPSNMSWWPSDFVENFESVSLSSQDETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSEKDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRSNVESPAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCLDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSVEKEENLQFHRRFEVSSNASGLPLRNRMLRSYTSLERNLSFSHSEPNIATAFGRRSRRKVIADQRTASSSPEHPSLRAHGLSKLSGDRTAFRDFADDQSTPRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQERLLREKEAGDSSLSHSLNDRAGSMDLLKQKSNFNLDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQSSERSGVSEYPMNDELESTWNKVLQSPMFNDGPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1146 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Vra2g1146 816 Pfam Protein tyrosine and serine/threonine kinase 561 808 IPR001245 GO:0004672|GO:0006468
Vra2g1146 816 SMART serkin_6 560 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1146 816 CDD STKc_MAP3K-like 566 808 - -
Vra2g1146 816 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 814 - -
Vra2g1146 816 MobiDBLite consensus disorder prediction 351 422 - -
Vra2g1146 816 Gene3D Transferase(Phosphotransferase) domain 1 639 815 - -
Vra2g1146 816 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Vra2g1146 816 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 814 - -
Vra2g1146 816 MobiDBLite consensus disorder prediction 408 422 - -
Vra2g1146 816 ProSitePatterns Protein kinases ATP-binding region signature. 566 587 IPR017441 GO:0005524
Vra2g1146 816 MobiDBLite consensus disorder prediction 392 407 - -
Vra2g1146 816 MobiDBLite consensus disorder prediction 495 522 - -
Vra2g1146 816 Gene3D Phosphorylase Kinase; domain 1 553 638 - -
Vra2g1146 816 ProSiteProfiles Protein kinase domain profile. 560 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1146 816 SUPERFAMILY Protein kinase-like (PK-like) 535 808 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1146 Vra-Chr2 14842063 14857543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1146 1 815 MAP Kinase Kinase Kinase AT3G58640 68.575 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vra2g1146 PK_Tyr_Ser-Thr 5.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1146 - - gmx:100807193 1495.33