LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1143	ATGAGGTTTGTTGAAGTTGAAGTTGAAGTTAAAGAAAACTTGTACACTTGGAGAGCTGTTCTCTCCGAATTCATCTCCACACTCATCTTCGTCTTCGCCGCCTCCGGTTCCACTATTGCCGTCAAAAACCTCGCCGTCAAAAACCTCGCCGTCGACCCGCCCATTGCTGTCCTCGCCATCGGTCCGCCCATTGCTTCCCTCGCTGTCGACCCGCCCATTGCTTCCCTCGCCGTCGCCATTGCCAATGCCTTGGCCCTCTCTGCCGCCGTCTCCTTCGGCAGAAACATTTCCGTCGGCCACGTCAACCCCGCAGTCACCTTCGCCGGCTTTGTCAGCGGCAAAGTTACCTGGTTCCGCTGCATCATCTTCTGGTTCGCGCAGATCCTCGGCTCCGTCATCGCCTGCTTGCTCCTGAAGTTCATCTCCGGCGGACAAAGAATACCGGTTTTTGAACTTTCTAGTGGTATGAAAGTGAAAAACGCTCTGGTGTTGGATACAACGAGGACGTTTGCTTTCATGTGCGCGGTGTATAATTTTTACTCCATTAGCAGCAGGAACGTTTCGAAAGCGATGAGACTTTTTATTGGCTTAGCCGTTGGAGCGAATTATTTGTGGATTAAGTTTTTTTTTTTTTCTTATGGGGTCTGCATGAACCCGGCTGCACCGTTTGGGCCTGCTCTGGTGGGCTGGAGCTGGGAAAACCATTGGGTTTCCTGGGTTGGGCCTCTCACAGGCGCTGGGCTTGCTGCTTGTTGCTTGTTTGATTGA	768	0.5234	MRFVEVEVEVKENLYTWRAVLSEFISTLIFVFAASGSTIAVKNLAVKNLAVDPPIAVLAIGPPIASLAVDPPIASLAVAIANALALSAAVSFGRNISVGHVNPAVTFAGFVSGKVTWFRCIIFWFAQILGSVIACLLLKFISGGQRIPVFELSSGMKVKNALVLDTTRTFAFMCAVYNFYSISSRNVSKAMRLFIGLAVGANYLWIKFFFFSYGVCMNPAAPFGPALVGWSWENHWVSWVGPLTGAGLAACCLFD*	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1143	255	PRINTS	Major intrinsic protein family signature	18	37	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vra2g1143	255	PRINTS	Major intrinsic protein family signature	82	106	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vra2g1143	255	PRINTS	Major intrinsic protein family signature	119	138	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vra2g1143	255	PRINTS	Major intrinsic protein family signature	236	255	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vra2g1143	255	Gene3D	Glycerol uptake facilitator protein.	5	254	IPR023271	-
	Vra2g1143	255	SUPERFAMILY	Aquaporin-like	15	251	IPR023271	-
	Vra2g1143	255	ProSitePatterns	MIP family signature.	100	108	IPR022357	-
	Vra2g1143	255	Pfam	Major intrinsic protein	15	251	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vra2g1143	255	PANTHER	AQUAPORIN-8	15	251	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1143	Vra-Chr2	14791451	14793264	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1143	18	250	Major Intrinsic Protein MIP	AT2G36830	45.957	1.05e-55	177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1143	K09873		-	gmx:100820403	219.164