Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1140 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATAGATGATATTCCCGCCGTCGATGCCTCCTTCACCGTCCCTTCCTCCGGCTTCACATGGCCTCCTAATGCCTTGAATGCCACTTCCAATGTCGGTGTTGAAGTTGACGGTTCACTGGTGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAGAGGGTTAGATCTGAGACATATGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACGAAAACTGATAAGGCTGCTATCCTGATTGATGCTGTCCGTATGGTGACACACTTAAGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGGGATGAGAAACAGGTGCTCAAGGCGGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAGTTTCATGCCTCCCCCTGCTGCTATCCCTGCTGCATTTGCGGCGCAAGGCCAAGCCCACGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCGCCTGCTGCAGTGGATACCTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4895 MVSRENTNWLFDYGLIDDIPAVDASFTVPSSGFTWPPNALNATSNVGVEVDGSLVDSDGLKESGSKKRVRSETYAASSSKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTHLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQVLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1140 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Vra2g1140 236 CDD bHLH_AtILR3_like 80 155 - -
Vra2g1140 236 Coils Coil 123 178 - -
Vra2g1140 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Vra2g1140 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Vra2g1140 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Vra2g1140 236 Gene3D - 78 155 IPR036638 GO:0046983
Vra2g1140 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vra2g1140 236 SMART finulus 81 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1140 Vra-Chr2 14693480 14697407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1140 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.711 4.38e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g1140 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1140 - - pvu:PHAVU_011G141300g 406.371