Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1135 ATGCCTTCCAAGGCCATCATGGAATGCAGCTCTTCTTCATCATCTCTAGTCACAAGAACATACGATGTGTTTGTGAGTTTCCGAGGTGAAGACACTCGAAACAACTTTACTGATTTTCTCTTCCAAGCTCTTCGTAGAAAAGGATTTCATGCCTTCAAAGACGATGCAGATCTCAAGAAAGGTGAATCCATAGCACCGGAACTGCAACAAGCAATTGAAGGGTCTCGCATTTTCATCGTGGTGTTCTCTAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTTGCCCACATTTGCTATTTCGTTGCAGCACCAGGAAGACATATTCTACCTATTTTTTATGATGTGGATCCGTCAGATGTGCGAAAACAAAGTGGATATTTTGAGAAACCCTTTGTCGAACTCGAAGAAAGATTTAGAGAAGATAATGAAAGGATGGAGGAAGTGCAGAGATGGAGAGAAGCTCTCACACAAGTAGCCAATCTCAGTGGCTGGGACATCAGAAACAAGCCACAGTATGCAGGGATTGAAGAAGTTGTTCAAAAGGTGACAGATATATTGGGTCATAAATTTTCAAGTCTTCCAAATGATAATCTAGTTGGGATGAAATTTCGTGTCGAGGAATTAGCAAAACTCTTATATTCGGAGTCAAGTAATGATGTTAGAGTTTTTGGAATCACTGGAATGGATGGAATAGGAAAGACAACTCTTGTTCGTGCTTTATACGAAGGAATCTCTCATCAATATGATTTTACTTGTTATATTGAAGATGTGAACCAGATTTATGGAGATTCTAGTACATTAGGTGTACAAAAGCAATTGCTTTCTCATTCTCTAAATGAAAAATGTGAAGAGATTTGCAATGTTTCTCAGGGAACTTATTTGATATGGAAAAGGCTACGAGGTAAAAAGGCACTTATAGTTCTTGACAATGTTGATGAAGTTGAACAACTAAAGATTTTTACAGGGAATCGAGACACTATGTTACGTGATTGCTTAGGTAGAGGGAGCATAATCATCATAATTTCCAGAGATGAACAAATATTGAGGATACATGAAGTAGACGAGGTTCACCAAGTTCAACCACTAAAGGATACTGAGGCCGTTCAATTATTTTGTAGACATGCTTTCAAAGCTAATGTTATTATGAATGGTTTTGAAAAGATGACAAATGAGGTACTATGGCATGCTCAGGGTCATCCTTTTGCAATTGAAATATTGGGTTCATCGTTATTTGGTCTAAGTGTGTCACAATGGAGAAGTGCATTAGCTATGCTAAGAGAAAATAAAAGTAAAAAGATTATGGATTTGCTTAGAGTAAGTTATGAAGCGTTGGATTATACAAACAAGCAAATATTTCTAGACATATCTTGCTTTCTCCATGGCTATGCAGTGGAACATGTAGTAGAAATTCTAAATTTTCGTGGATTTTATCCTGAATATGGCTTGCAAGTTCTGATAAATAAATCGCTCTTGATCGTTGAGGATGGGAGAATTAAAATGCATCGCTTGTTGATGGATTTGGGGCAATCTATTGTTCGTGAAATATCACCTAAAGAACCAAGAAATTGGAGCAGAGTGTGGAGCTACAAGAATCTCCAAAATATACTGTCAAATAACATGCCAGCAGAAAATCTGGAATGCGTAGTTTGTGAGTTCGCACTCTTTAAAACAACCTTGAGGGCAGATGGGTTTTCAAACATGAGGCACCTTAAGTTGCTCAAGTTGAATTATGTGGAATTTTCCGGAAGCCTGGACTATCTTCCTAGTGAGTTAGGATATCTATGTTGGCATGGATATCCATTTAAGTCTTTGCCACCTCGTTTTCTACCATACAAGCTTGTTTCGTTGTCCCTGGCTAATAGCAAAATCAAACAACTATGGGAAGATACAAAGCCTTTACACAATTTGAAGCGTTTGGATCTCTCTTCATCAGAAGACCTAATCAAGGTGCCAGATTTAGGGGAGGCCATAAATCTTGAGTGGCTATCTCTGAAAAATTGTACAAAAATAAGGGAGATACATCCATCCATTGGTCTTCTAAGAAAACTTTCTTATGTGACTTTGGAAGGCTGCAAAAGTCTTATAAAGTTGCCACATTTTGAGGAGACCCAAAATCTTGAAATACTAGATCTTGAGAGATGTATAAAACTGGAGAAGATCCATCCATCCATTGGTCTTATAAGAAAACTGAAATTTTTGAACTTGAAAAACTGCGAAAGTCTTACCATGTTACCACATTTTAGGGAGGACCTAAATCTTGAAATTCTAAATCTCGAAGGATGTAGGAAGCTCGGGCAGATCAATCCCTCCATTCATCATCTAAAAAAGCTTACTGTTTTGAATTTGAAAGGCTGCAAAAGGCTGGTAAGCTTGCCCAACAGCATATTATGCCTCAATTCTCTAAGTTATCTGAATCTCTCGGCCTGTTCAAATCTGTCTTATATACAGTTATTAGAAAAACCAAGGGATGAAGGTCATTCGAAGAGGCCTTGTATAGGTGAAGCTTCTCTAAGATCATCCATCATGAAAAGGTGGTTTAAGTCGCCTTTACACTTGTTCAATTCAAGAAAGCATAAAGATTCATTTAGCCACTTGTTTCCTTCTCCCAATTTCTCATGTATTCGTGAACTTGATCTAAGTTTCTGCGCTTTACTTCAAATCCCTGATGTTATTGGAAATTTGCATAGCTTAGAAAGGCTAAATTTAAGTGGAAACAGTTTTTGCAAACTACCCAACCTCAAGGAGCTTTCCAAACTGTATCGTTTAGTCTTAAGGCATTGCAGGCAACTGAAATATTTGCCTGAGCTACCTTCACAAACTTACTTGCCATCAGTAATTTACGAACGGCCATGGCCAACAACAGAATCTCCAGTATGGGTAAATGCACCAGAAAAACCACTTCTACATTTTATAAACTCAGGTTTAGAAGTTTTGAACTGCCCAGAGTTAGTTGAGATTGAAAGGGAACGCTGTACGAGAATGACTGTTTCATGGATGATACAAATACTTCAGGCGCAACGCCGCATAGATCCGTTGTCCATTCCAATGAACCCAAAATTTTCAAGTGTTATACCTGGAAGTGAAATACCAAGGCTGTTCAACCATCAGGAGTATAGCACGTTAACAAGGATTGATGAGTCTCCCTTTGGGCATGACTATGTAGCTGCTGTGTTTTGTGTACTATTTGAAGCTCGGTTCAAAAGGGGGATTGTGTCATCAATTTGTCCTCCGAAAGCAAAAGGAAAGTTTAATGACAGTAAGATATCAATGGTTTTTGATTCTGATCTAGCCATCGCGGACTATGTTTCAGATTACCTGTGGATATTATTTTTGGATACAGATGAATTCATTCAATATCAGTATGCACCTCTTTATGATGAAATAGTAGACTTAGTCGGGAATGATCATTATGATATAGATGTGAAGAAATGCGGATATCGTCTGATATATGATCTGGATCTAGAACTATCAAACTTAACAATGATGCATGGCGGAAATTTGCCGGCCTTGAAGAACGACCTTTTGGCAATTGAAGATAACAAGTAG 3552 0.382 MPSKAIMECSSSSSSLVTRTYDVFVSFRGEDTRNNFTDFLFQALRRKGFHAFKDDADLKKGESIAPELQQAIEGSRIFIVVFSKNYASSTWCLRELAHICYFVAAPGRHILPIFYDVDPSDVRKQSGYFEKPFVELEERFREDNERMEEVQRWREALTQVANLSGWDIRNKPQYAGIEEVVQKVTDILGHKFSSLPNDNLVGMKFRVEELAKLLYSESSNDVRVFGITGMDGIGKTTLVRALYEGISHQYDFTCYIEDVNQIYGDSSTLGVQKQLLSHSLNEKCEEICNVSQGTYLIWKRLRGKKALIVLDNVDEVEQLKIFTGNRDTMLRDCLGRGSIIIIISRDEQILRIHEVDEVHQVQPLKDTEAVQLFCRHAFKANVIMNGFEKMTNEVLWHAQGHPFAIEILGSSLFGLSVSQWRSALAMLRENKSKKIMDLLRVSYEALDYTNKQIFLDISCFLHGYAVEHVVEILNFRGFYPEYGLQVLINKSLLIVEDGRIKMHRLLMDLGQSIVREISPKEPRNWSRVWSYKNLQNILSNNMPAENLECVVCEFALFKTTLRADGFSNMRHLKLLKLNYVEFSGSLDYLPSELGYLCWHGYPFKSLPPRFLPYKLVSLSLANSKIKQLWEDTKPLHNLKRLDLSSSEDLIKVPDLGEAINLEWLSLKNCTKIREIHPSIGLLRKLSYVTLEGCKSLIKLPHFEETQNLEILDLERCIKLEKIHPSIGLIRKLKFLNLKNCESLTMLPHFREDLNLEILNLEGCRKLGQINPSIHHLKKLTVLNLKGCKRLVSLPNSILCLNSLSYLNLSACSNLSYIQLLEKPRDEGHSKRPCIGEASLRSSIMKRWFKSPLHLFNSRKHKDSFSHLFPSPNFSCIRELDLSFCALLQIPDVIGNLHSLERLNLSGNSFCKLPNLKELSKLYRLVLRHCRQLKYLPELPSQTYLPSVIYERPWPTTESPVWVNAPEKPLLHFINSGLEVLNCPELVEIERERCTRMTVSWMIQILQAQRRIDPLSIPMNPKFSSVIPGSEIPRLFNHQEYSTLTRIDESPFGHDYVAAVFCVLFEARFKRGIVSSICPPKAKGKFNDSKISMVFDSDLAIADYVSDYLWILFLDTDEFIQYQYAPLYDEIVDLVGNDHYDIDVKKCGYRLIYDLDLELSNLTMMHGGNLPALKNDLLAIEDNK* 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1135 1183 Gene3D - 192 359 IPR027417 -
Vra2g1135 1183 SUPERFAMILY L domain-like 870 944 - -
Vra2g1135 1183 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Vra2g1135 1183 SUPERFAMILY L domain-like 514 816 - -
Vra2g1135 1183 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 166 IPR035897 -
Vra2g1135 1183 Gene3D Ribonuclease Inhibitor 700 825 IPR032675 -
Vra2g1135 1183 Gene3D Ribonuclease Inhibitor 840 1006 IPR032675 -
Vra2g1135 1183 PRINTS Disease resistance protein signature 224 239 - -
Vra2g1135 1183 PRINTS Disease resistance protein signature 300 314 - -
Vra2g1135 1183 PRINTS Disease resistance protein signature 398 412 - -
Vra2g1135 1183 PRINTS Disease resistance protein signature 633 649 - -
Vra2g1135 1183 Gene3D - 18 191 IPR035897 -
Vra2g1135 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 746 1077 IPR044974 GO:0006952
Vra2g1135 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 695 745 IPR044974 GO:0006952
Vra2g1135 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 696 IPR044974 GO:0006952
Vra2g1135 1183 SMART till_3 20 163 IPR000157 GO:0007165
Vra2g1135 1183 Gene3D Ribonuclease Inhibitor 528 699 IPR032675 -
Vra2g1135 1183 ProSiteProfiles Leucine-rich repeat profile. 898 919 IPR001611 GO:0005515
Vra2g1135 1183 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 695 745 - -
Vra2g1135 1183 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 746 1077 - -
Vra2g1135 1183 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 696 - -
Vra2g1135 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 457 IPR027417 -
Vra2g1135 1183 Pfam NB-ARC domain 206 435 IPR002182 GO:0043531
Vra2g1135 1183 Pfam TIR domain 21 193 IPR000157 GO:0007165
Vra2g1135 1183 Gene3D - 363 447 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1135 Vra-Chr2 14485498 14497240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1135 201 818 WRKY Transcription Factor Family AT5G45050 31.628 2.46e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1135 - - vra:106756186 2360.49